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Aliases for RNA5SP243 Gene

Aliases for RNA5SP243 Gene

  • RNA, 5S Ribosomal Pseudogene 243 2 3 5
  • RNA, 5S Ribosomal 243 2 3
  • RN5S243 3

External Ids for RNA5SP243 Gene

Previous HGNC Symbols for RNA5SP243 Gene

  • RN5S243

Previous GeneCards Identifiers for RNA5SP243 Gene

  • GC07P128344
  • GC07P128385
  • GC07P128440
  • GC07P128487

Summaries for RNA5SP243 Gene

GeneCards Summary for RNA5SP243 Gene

RNA5SP243 (RNA, 5S Ribosomal Pseudogene 243) is a Pseudogene.

Additional gene information for RNA5SP243 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP243 Gene

Genomics for RNA5SP243 Gene

GeneHancer (GH) Regulatory Elements for RNA5SP243 Gene

Promoters and enhancers for RNA5SP243 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I128697 Promoter/Enhancer 1.5 Ensembl ENCODE 550.8 -0.3 -274 0.8 HDGF ATF1 ARNT SIN3A GTF3C2 TCF12 POLR2B CBX5 E2F8 ARID2 RNA5SP242 RNA5SP243 ENSG00000242588 ENSG00000243302 ENSG00000230715 ENSG00000243679 RPS10P15 CDC26P1 ENSG00000229413 RBM28
GH07I128707 Promoter/Enhancer 1.2 EPDnew ENCODE 0.4 +10.9 10940 1.3 YBX3 ASH1L GLI4 MCM2 ZNF366 POLR2A ZNF26 ATF7 SRF ZBTB2 FAM71F1 GC07M128710 CICP14 RBM28 ENSG00000243230 METTL2B ENSG00000272601 SMO NRF1 RNA5SP243
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5SP243 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5SP243 Gene

Genomic Locations for RNA5SP243 Gene
chr7:128,697,710-128,697,744
(GRCh38/hg38)
Size:
35 bases
Orientation:
Plus strand
chr7:128,337,764-128,337,798
(GRCh37/hg19)

Genomic View for RNA5SP243 Gene

Genes around RNA5SP243 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP243 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP243 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP243 Gene

Proteins for RNA5SP243 Gene

Post-translational modifications for RNA5SP243 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP243 Gene

Domains & Families for RNA5SP243 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP243 Gene

Function for RNA5SP243 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP243 Gene

Localization for RNA5SP243 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP243 Gene

Pathways & Interactions for RNA5SP243 Gene

SuperPathways for RNA5SP243 Gene

No Data Available

Interacting Proteins for RNA5SP243 Gene

Gene Ontology (GO) - Biological Process for RNA5SP243 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP243 Gene

Drugs & Compounds for RNA5SP243 Gene

No Compound Related Data Available

Transcripts for RNA5SP243 Gene

mRNA/cDNA for RNA5SP243 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP243 Gene

No ASD Table

Relevant External Links for RNA5SP243 Gene

GeneLoc Exon Structure for
RNA5SP243
ECgene alternative splicing isoforms for
RNA5SP243

Expression for RNA5SP243 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP243 Gene:

RNA5SP243
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP243 Gene

Orthologs for RNA5SP243 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP243 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 97 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 86 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 28 (a)
ManyToMany
Species where no ortholog for RNA5SP243 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP243 Gene

ENSEMBL:
Gene Tree for RNA5SP243 (if available)
TreeFam:
Gene Tree for RNA5SP243 (if available)

Paralogs for RNA5SP243 Gene

No data available for Paralogs for RNA5SP243 Gene

Variants for RNA5SP243 Gene

Additional Variant Information for RNA5SP243 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP243

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP243 Gene

Disorders for RNA5SP243 Gene

No disorders were found for RNA5SP243 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP243 Gene

Publications for RNA5SP243 Gene

No publications were found for RNA5SP243 Gene.

Products for RNA5SP243 Gene

Sources for RNA5SP243 Gene

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