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Aliases for RNA5SP241 Gene

Subcategory (RNA class) for RNA5SP241 Gene

rRNA

Aliases for RNA5SP241 Gene

  • RNA, 5S Ribosomal Pseudogene 241 2 3 5
  • RNA, 5S Ribosomal 241 2 3
  • RN5S241 3

External Ids for RNA5SP241 Gene

ORGUL Members for RNA5SP241 Gene

Previous HGNC Symbols for RNA5SP241 Gene

  • RN5S241

Previous GeneCards Identifiers for RNA5SP241 Gene

  • GC07M120725

Summaries for RNA5SP241 Gene

GeneCards Summary for RNA5SP241 Gene

RNA5SP241 (RNA, 5S Ribosomal Pseudogene 241) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP241 Gene

Genomics for RNA5SP241 Gene

Regulatory Elements for RNA5SP241 Gene

Enhancers for RNA5SP241 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G121081 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -0.8 -794 6.3 HNRNPUL1 HDGF PKNOX1 ATF1 ARNT AGO1 SIN3A ZNF2 FOS KLF13 CPED1 ING3 GC07M121084 RNA5SP241 GC07P121089
GH07G121077 1 dbSUPER 0.7 +4.7 4656 2.7 HDGF PKNOX1 ARNT YY1 ZNF766 ZNF592 CREB3 SMARCA4 MYNN NBN CPED1 ING3 GC07M121084 RNA5SP241 HMGN1P18
GH07G121075 1.5 Ensembl ENCODE dbSUPER 0.4 +7.1 7101 1.8 PKNOX1 ATF1 CREB3L1 ARNT TCF12 ZNF766 ELK1 GATA2 FOS JUNB CPED1 ING3 GC07M121084 RNA5SP241 HMGN1P18
GH07G121072 0.8 dbSUPER 0.4 +10.6 10624 1.2 BRD4 SOX13 PKNOX1 DDX20 MAX CEBPG RAD21 YY1 HNF4G SOX5 CPED1 ING3 TSPAN12 RNA5SP241 GC07M121084 HMGN1P18
GH07G121070 0.7 dbSUPER 0.4 +12.3 12291 1.8 LEF1 TBL1XR1 BACH1 ZNF175 CEBPG CHAMP1 FOSL1 SMARCE1 ZNF197 ELF1 CPED1 FAM3C RNA5SP241 GC07M121084 HMGN1P18
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP241 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP241 Gene

Chromosome:
7
Start:
121,083,700 bp from pter
End:
121,083,813 bp from pter
Size:
114 bases
Orientation:
Minus strand

Genomic View for RNA5SP241 Gene

Genes around RNA5SP241 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP241 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP241 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP241 Gene

Proteins for RNA5SP241 Gene

Post-translational modifications for RNA5SP241 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP241 Gene

Domains & Families for RNA5SP241 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP241 Gene

Function for RNA5SP241 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP241 Gene

Localization for RNA5SP241 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP241 Gene

Pathways & Interactions for RNA5SP241 Gene

SuperPathways for RNA5SP241 Gene

No Data Available

Interacting Proteins for RNA5SP241 Gene

Gene Ontology (GO) - Biological Process for RNA5SP241 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP241 Gene

Drugs & Compounds for RNA5SP241 Gene

No Compound Related Data Available

Transcripts for RNA5SP241 Gene

mRNA/cDNA for RNA5SP241 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP241 Gene

No ASD Table

Relevant External Links for RNA5SP241 Gene

GeneLoc Exon Structure for
RNA5SP241
ECgene alternative splicing isoforms for
RNA5SP241

Expression for RNA5SP241 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP241 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP241 Gene:

RNA5SP241
genes like me logo Genes that share expression patterns with RNA5SP241: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP241 Gene

Orthologs for RNA5SP241 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RNA5SP241 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 96 (a)
OneToOne
Species where no ortholog for RNA5SP241 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP241 Gene

ENSEMBL:
Gene Tree for RNA5SP241 (if available)
TreeFam:
Gene Tree for RNA5SP241 (if available)

Paralogs for RNA5SP241 Gene

No data available for Paralogs for RNA5SP241 Gene

Variants for RNA5SP241 Gene

Relevant External Links for RNA5SP241 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP241

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP241 Gene

Disorders for RNA5SP241 Gene

No disorders were found for RNA5SP241 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP241 Gene

Publications for RNA5SP241 Gene

No publications were found for RNA5SP241 Gene.

Products for RNA5SP241 Gene

Sources for RNA5SP241 Gene

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