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Aliases for RNA5SP216 Gene

Aliases for RNA5SP216 Gene

  • RNA, 5S Ribosomal Pseudogene 216 2 3 5
  • RNA, 5S Ribosomal 216 2 3
  • RN5S216 3

External Ids for RNA5SP216 Gene

Previous HGNC Symbols for RNA5SP216 Gene

  • RN5S216

Previous GeneCards Identifiers for RNA5SP216 Gene

  • GC06M126303

Summaries for RNA5SP216 Gene

GeneCards Summary for RNA5SP216 Gene

RNA5SP216 (RNA, 5S Ribosomal Pseudogene 216) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP216 Gene

Genomics for RNA5SP216 Gene

Regulatory Elements for RNA5SP216 Gene

Enhancers for RNA5SP216 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G125955 1.8 FANTOM5 ENCODE dbSUPER 0.3 +22.9 22874 3.7 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 SP3 TRMT11 NCOA7 HINT3 RNA5SP216
GH06G125983 1.1 ENCODE 0.4 -5.4 -5432 4.7 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 HINT3 TRMT11 RNA5SP216
GH06G125974 1 ENCODE dbSUPER 0.4 +5.5 5525 0.2 CTCF ATF1 ZBTB21 CEBPG RAD21 ARID3A SCRT2 SMC3 ZNF654 TRIM22 RNA5SP216 HINT3
GH06G125960 0.9 ENCODE dbSUPER 0.4 +19.7 19665 0.1 MAX RAD21 GABPA YY1 FOXA1 JUND ATF3 ZBTB33 HNF4A HINT3 RNA5SP216
GH06G125962 0.7 dbSUPER 0.4 +15.7 15719 3.8 TSC22D4 MAX YY1 ZNF316 NFE2 PRDM10 MAFK SMARCE1 RNF2 MAFG HDDC2 HINT3 RNA5SP216
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP216 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP216 Gene

Chromosome:
6
Start:
125,979,812 bp from pter
End:
125,979,934 bp from pter
Size:
123 bases
Orientation:
Minus strand

Genomic View for RNA5SP216 Gene

Genes around RNA5SP216 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP216 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP216 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP216 Gene

Proteins for RNA5SP216 Gene

Post-translational modifications for RNA5SP216 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP216 Gene

Domains & Families for RNA5SP216 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP216 Gene

Function for RNA5SP216 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP216 Gene

Localization for RNA5SP216 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP216 Gene

Pathways & Interactions for RNA5SP216 Gene

SuperPathways for RNA5SP216 Gene

No Data Available

Interacting Proteins for RNA5SP216 Gene

Gene Ontology (GO) - Biological Process for RNA5SP216 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP216 Gene

Drugs & Compounds for RNA5SP216 Gene

No Compound Related Data Available

Transcripts for RNA5SP216 Gene

mRNA/cDNA for RNA5SP216 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP216 Gene

No ASD Table

Relevant External Links for RNA5SP216 Gene

GeneLoc Exon Structure for
RNA5SP216
ECgene alternative splicing isoforms for
RNA5SP216

Expression for RNA5SP216 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP216 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP216 Gene:

RNA5SP216
genes like me logo Genes that share expression patterns with RNA5SP216: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP216 Gene

Orthologs for RNA5SP216 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP216 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35 35
  • 65 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 56 (a)
OneToOne
Species where no ortholog for RNA5SP216 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP216 Gene

ENSEMBL:
Gene Tree for RNA5SP216 (if available)
TreeFam:
Gene Tree for RNA5SP216 (if available)

Paralogs for RNA5SP216 Gene

No data available for Paralogs for RNA5SP216 Gene

Variants for RNA5SP216 Gene

Relevant External Links for RNA5SP216 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP216

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP216 Gene

Disorders for RNA5SP216 Gene

No disorders were found for RNA5SP216 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP216 Gene

Publications for RNA5SP216 Gene

No publications were found for RNA5SP216 Gene.

Products for RNA5SP216 Gene

Sources for RNA5SP216 Gene

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