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Aliases for RNA5SP21 Gene

Aliases for RNA5SP21 Gene

  • RNA, 5S Ribosomal Pseudogene 21 2 3 5
  • RNA, 5S Ribosomal 21 2 3
  • RN5S21 3

External Ids for RNA5SP21 Gene

Previous HGNC Symbols for RNA5SP21 Gene

  • RN5S21

Previous GeneCards Identifiers for RNA5SP21 Gene

  • GC01P078248

Summaries for RNA5SP21 Gene

GeneCards Summary for RNA5SP21 Gene

RNA5SP21 (RNA, 5S Ribosomal Pseudogene 21) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP21 Gene

Genomics for RNA5SP21 Gene

Regulatory Elements for RNA5SP21 Gene

Enhancers for RNA5SP21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G077829 1.3 Ensembl ENCODE dbSUPER 10.8 +52.6 52637 6.5 PKNOX1 SIN3A BMI1 GATA3 GATA2 PRDM10 NFE2 MAFK TCF7L2 NFE2L2 MIGA1 RNA5SP21 ACTG1P21 USP33 IFI44 NEXN FUBP1 NSRP1P1 LOC653631
GH01G077823 1.2 Ensembl ENCODE dbSUPER 11.5 +45.1 45113 2.4 SCRT1 CTCF JUN BHLHE40 HLF CEBPB CEBPG RAD21 JUND SCRT2 MIGA1 RNA5SP21 ACTG1P21 LOC653631 NSRP1P1
GH01G078070 1.2 Ensembl ENCODE dbSUPER 9.4 +291.4 291445 2.1 PKNOX1 NFIB ARNT JUN FEZF1 CEBPG YY1 FOS MAFK JUNB GIPC2 ACTG1P21 MIGA1 RNA5SP21 IFI44 RNU6-1102P LOC100131495
GH01G077900 0.8 ENCODE dbSUPER 10.5 +121.0 120967 0.2 CTCF ZNF654 SMC3 REST RAD21 RFX5 ACTG1P21 MIGA1 RNA5SP21 ZZZ3 NEXN-AS1 DNAJB4
GH01G077686 0.8 Ensembl ENCODE 10.4 -92.4 -92413 1.4 ZNF263 CTCF POLR2A ZBTB33 RAD21 ACTG1P21 RNA5SP21 MIGA1 AK5 GIPC2 ZZZ3 USP33
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP21 on UCSC Golden Path with GeneCards custom track

Promoters for RNA5SP21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000008743 -103 1600 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 SP3

Genomic Location for RNA5SP21 Gene

Chromosome:
1
Start:
77,779,904 bp from pter
End:
77,779,999 bp from pter
Size:
96 bases
Orientation:
Plus strand

Genomic View for RNA5SP21 Gene

Genes around RNA5SP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP21 Gene

Proteins for RNA5SP21 Gene

Post-translational modifications for RNA5SP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP21 Gene

Domains & Families for RNA5SP21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP21 Gene

Function for RNA5SP21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP21 Gene

Localization for RNA5SP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP21 Gene

Pathways & Interactions for RNA5SP21 Gene

SuperPathways for RNA5SP21 Gene

No Data Available

Interacting Proteins for RNA5SP21 Gene

Gene Ontology (GO) - Biological Process for RNA5SP21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP21 Gene

Drugs & Compounds for RNA5SP21 Gene

No Compound Related Data Available

Transcripts for RNA5SP21 Gene

mRNA/cDNA for RNA5SP21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP21 Gene

No ASD Table

Relevant External Links for RNA5SP21 Gene

GeneLoc Exon Structure for
RNA5SP21
ECgene alternative splicing isoforms for
RNA5SP21

Expression for RNA5SP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP21 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP21 Gene:

RNA5SP21
genes like me logo Genes that share expression patterns with RNA5SP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP21 Gene

Orthologs for RNA5SP21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35 35
  • 68 (a)
OneToMany
mouse
(Mus musculus)
Mammalia n-R5s42 35
  • 64 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 58 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 58 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 54 (a)
ManyToMany
chicken
(Gallus gallus)
Aves 5S_rRNA 35
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 47 (a)
ManyToMany
Species where no ortholog for RNA5SP21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP21 Gene

ENSEMBL:
Gene Tree for RNA5SP21 (if available)
TreeFam:
Gene Tree for RNA5SP21 (if available)

Paralogs for RNA5SP21 Gene

No data available for Paralogs for RNA5SP21 Gene

Variants for RNA5SP21 Gene

Relevant External Links for RNA5SP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP21 Gene

Disorders for RNA5SP21 Gene

No disorders were found for RNA5SP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP21 Gene

Publications for RNA5SP21 Gene

No publications were found for RNA5SP21 Gene.

Products for RNA5SP21 Gene

Sources for RNA5SP21 Gene

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