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Aliases for RNA5SP204 Gene

Subcategory (RNA class) for RNA5SP204 Gene

rRNA

Aliases for RNA5SP204 Gene

  • RNA, 5S Ribosomal Pseudogene 204 2 3 5
  • RNA, 5S Ribosomal 204 2 3
  • RN5S204 3

External Ids for RNA5SP204 Gene

ORGUL Members for RNA5SP204 Gene

Previous HGNC Symbols for RNA5SP204 Gene

  • RN5S204

Summaries for RNA5SP204 Gene

GeneCards Summary for RNA5SP204 Gene

RNA5SP204 (RNA, 5S Ribosomal Pseudogene 204) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP204 Gene

Genomics for RNA5SP204 Gene

Regulatory Elements for RNA5SP204 Gene

Enhancers for RNA5SP204 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F017725 0.9 Ensembl ENCODE 0.8 -3.4 -3398 0.6 HDGF MLX ARID4B ZNF48 KLF13 NFYC MXD4 REST KAT8 RFX3 GC06M017721 RNA5SP204 ENSG00000201442
GH06F017720 0.2 ENCODE 0.8 +0.3 252 2.2 GATA3 IKZF1 DPF2 NUP153 GC06M017721 RNA5SP204
GH06F017714 1.3 VISTA FANTOM5 Ensembl ENCODE 0.4 +6.5 6516 2.5 HDGF ARNT MLX ARID4B SIN3A ZNF766 FOS DEK JUNB SMARCA4 RNU6-190P NHLRC1 NUP153 GC06M017721 RNA5SP204
GH06F017729 0.3 FANTOM5 0.4 -7.5 -7492 0.3 CBX3 PKNOX1 ATF1 ARNT CHAMP1 SCRT2 FOS ZBTB11 NFYC NCOA1 GC06M017721 ENSG00000201442 RNA5SP204
GH06F017712 0.9 Ensembl 0.4 +9.0 9003 0.2 SOX13 TFAP4 SAP130 TBL1XR1 ARID4B KMT2B TEAD3 GATAD1 RFXANK NR2F6 RNU6-190P NHLRC1 GC06M017721 RNA5SP204 NUP153
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP204 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP204 Gene

Chromosome:
6
Start:
17,721,786 bp from pter
End:
17,721,903 bp from pter
Size:
118 bases
Orientation:
Minus strand

Genomic View for RNA5SP204 Gene

Genes around RNA5SP204 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP204 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP204 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP204 Gene

Proteins for RNA5SP204 Gene

Post-translational modifications for RNA5SP204 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP204 Gene

Domains & Families for RNA5SP204 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP204 Gene

Function for RNA5SP204 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP204 Gene

Localization for RNA5SP204 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP204 Gene

Pathways & Interactions for RNA5SP204 Gene

SuperPathways for RNA5SP204 Gene

No Data Available

Interacting Proteins for RNA5SP204 Gene

Gene Ontology (GO) - Biological Process for RNA5SP204 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP204 Gene

Transcripts for RNA5SP204 Gene

mRNA/cDNA for RNA5SP204 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP204 Gene

No ASD Table

Relevant External Links for RNA5SP204 Gene

GeneLoc Exon Structure for
RNA5SP204
ECgene alternative splicing isoforms for
RNA5SP204

Expression for RNA5SP204 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP204 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP204 Gene:

RNA5SP204
genes like me logo Genes that share expression patterns with RNA5SP204: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP204 Gene

Orthologs for RNA5SP204 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP204 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 74 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23997 35
  • 60 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 73 (a)
ManyToMany
Species where no ortholog for RNA5SP204 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP204 Gene

ENSEMBL:
Gene Tree for RNA5SP204 (if available)
TreeFam:
Gene Tree for RNA5SP204 (if available)

Paralogs for RNA5SP204 Gene

No data available for Paralogs for RNA5SP204 Gene

Variants for RNA5SP204 Gene

Relevant External Links for RNA5SP204 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP204

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP204 Gene

Disorders for RNA5SP204 Gene

No disorders were found for RNA5SP204 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP204 Gene

Publications for RNA5SP204 Gene

No publications were found for RNA5SP204 Gene.

Products for RNA5SP204 Gene

Sources for RNA5SP204 Gene

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