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Aliases for RNA5SP203 Gene

Aliases for RNA5SP203 Gene

  • RNA, 5S Ribosomal Pseudogene 203 2 3 5
  • RNA, 5S Ribosomal 203 2 3
  • RN5S203 3

External Ids for RNA5SP203 Gene

Previous HGNC Symbols for RNA5SP203 Gene

  • RN5S203

Summaries for RNA5SP203 Gene

GeneCards Summary for RNA5SP203 Gene

RNA5SP203 (RNA, 5S Ribosomal Pseudogene 203) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP203 Gene

Genomics for RNA5SP203 Gene

Regulatory Elements for RNA5SP203 Gene

Enhancers for RNA5SP203 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G010398 3.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.6 +343.0 343032 22.9 CREB3L1 AGO1 FEZF1 ZNF143 ZNF548 ZNF263 SP3 MEF2D ZNF610 GLIS1 RNA5SP203 TFAP2A PAK1IP1 TMEM14C TMEM14B C6orf52 TFAP2A-AS1
GH06G011092 1.2 ENCODE 22.7 -341.6 -341622 3.8 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 RNA5SP203 ERVFRD-1 SMIM13
GH06G010517 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +231.6 231638 7.1 HDGF FOXA2 PKNOX1 ARNT ARID4B DMAP1 FEZF1 ZNF2 ZNF766 CBX5 GCNT2 PAK1IP1 C6orf52 TMEM14B RNA5SP203 SYCP2L LOC101928146 GC06M010576
GH06G010422 1 dbSUPER 11.2 +329.7 329690 1.8 ZNF133 SIN3A FEZF1 ZNF2 GLIS2 ZNF302 KLF7 ZNF263 YY2 ZNF488 RNA5SP203 ENSG00000228478 TFAP2A
GH06G010746 1.4 ENCODE dbSUPER 0.7 +4.4 4424 3.5 CREB3L1 MLX ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D ENSG00000272097 RNA5SP203 ENSG00000272162
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP203 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP203 Gene

Chromosome:
6
Start:
10,752,791 bp from pter
End:
10,752,926 bp from pter
Size:
136 bases
Orientation:
Minus strand

Genomic View for RNA5SP203 Gene

Genes around RNA5SP203 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP203 Gene

Proteins for RNA5SP203 Gene

Post-translational modifications for RNA5SP203 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP203 Gene

Domains & Families for RNA5SP203 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP203 Gene

Function for RNA5SP203 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP203 Gene

Localization for RNA5SP203 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP203 Gene

Pathways & Interactions for RNA5SP203 Gene

SuperPathways for RNA5SP203 Gene

No Data Available

Interacting Proteins for RNA5SP203 Gene

Gene Ontology (GO) - Biological Process for RNA5SP203 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP203 Gene

Drugs & Compounds for RNA5SP203 Gene

No Compound Related Data Available

Transcripts for RNA5SP203 Gene

mRNA/cDNA for RNA5SP203 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP203 Gene

No ASD Table

Relevant External Links for RNA5SP203 Gene

GeneLoc Exon Structure for
RNA5SP203
ECgene alternative splicing isoforms for
RNA5SP203

Expression for RNA5SP203 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP203 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP203 Gene:

RNA5SP203
genes like me logo Genes that share expression patterns with RNA5SP203: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP203 Gene

Orthologs for RNA5SP203 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP203 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 72 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 72 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22731 35
  • 66 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 66 (a)
ManyToMany
chicken
(Gallus gallus)
Aves 5S_rRNA 35
  • 69 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35 35 35
  • 67 (a)
ManyToMany
Species where no ortholog for RNA5SP203 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP203 Gene

ENSEMBL:
Gene Tree for RNA5SP203 (if available)
TreeFam:
Gene Tree for RNA5SP203 (if available)

Paralogs for RNA5SP203 Gene

No data available for Paralogs for RNA5SP203 Gene

Variants for RNA5SP203 Gene

Relevant External Links for RNA5SP203 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP203

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP203 Gene

Disorders for RNA5SP203 Gene

No disorders were found for RNA5SP203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP203 Gene

Publications for RNA5SP203 Gene

No publications were found for RNA5SP203 Gene.

Products for RNA5SP203 Gene

Sources for RNA5SP203 Gene

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