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Aliases for RNA5SP197 Gene

Subcategory (RNA class) for RNA5SP197 Gene

rRNA

Aliases for RNA5SP197 Gene

  • RNA, 5S Ribosomal Pseudogene 197 2 3 5
  • RNA, 5S Ribosomal 197 2 3
  • RN5S197 3

External Ids for RNA5SP197 Gene

ORGUL Members for RNA5SP197 Gene

Previous HGNC Symbols for RNA5SP197 Gene

  • RN5S197

Previous GeneCards Identifiers for RNA5SP197 Gene

  • GC05M150858

Summaries for RNA5SP197 Gene

GeneCards Summary for RNA5SP197 Gene

RNA5SP197 (RNA, 5S Ribosomal Pseudogene 197) is a Pseudogene, and is affiliated with the rRNA class.

Additional gene information for RNA5SP197 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP197 Gene

Genomics for RNA5SP197 Gene

Regulatory Elements for RNA5SP197 Gene

Enhancers for RNA5SP197 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H151480 0.6 Ensembl ENCODE 0.7 -3.3 -3330 1 POLR2A SLC36A1 ENSG00000253897 FAT2 RNA5SP197 GC05M151478 GC05M151491
GH05H151450 1.1 Ensembl ENCODE 0.3 +25.9 25872 2 BMI1 BATF EGR1 FOS ETV6 RUNX3 CREM IKZF2 JUNB SSRP1 SLC36A2 SLC36A1 FAT2 ENSG00000271795 SPARC LOC105378234 RNA5SP197 GC05M151478
GH05H151446 1.1 ENCODE 0.3 +29.6 29560 2 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF300P1 ZNF300 SLC36A2 G3BP1 FAT2 SLC36A1 ENSG00000271795 LOC105378234 GC05M151478 RNA5SP197
GH05H151482 0.7 Ensembl ENCODE 0.4 -5.8 -5847 1 POLR2A MYC SLC36A1 FAT2 RNA5SP197 GC05M151491 GC05M151478
GH05H151455 0.5 ENCODE 0.4 +19.5 19495 4 CTCF NFIC LCORL NFIB SLC36A1 ENSG00000253897 LOC105378231 FAT2 RNA5SP197 GC05M151478 LOC105378234
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP197 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP197 Gene

Chromosome:
5
Start:
151,477,459 bp from pter
End:
151,477,577 bp from pter
Size:
119 bases
Orientation:
Minus strand

Genomic View for RNA5SP197 Gene

Genes around RNA5SP197 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP197 Gene

Proteins for RNA5SP197 Gene

Post-translational modifications for RNA5SP197 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP197 Gene

Domains & Families for RNA5SP197 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP197 Gene

Function for RNA5SP197 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP197
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP197 Gene

Localization for RNA5SP197 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5SP197 Gene

Pathways & Interactions for RNA5SP197 Gene

SuperPathways for RNA5SP197 Gene

No Data Available

Interacting Proteins for RNA5SP197 Gene

Gene Ontology (GO) - Biological Process for RNA5SP197 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP197 Gene

Drugs & Compounds for RNA5SP197 Gene

No Compound Related Data Available

Transcripts for RNA5SP197 Gene

mRNA/cDNA for RNA5SP197 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5SP197
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP197 Gene

No ASD Table

Relevant External Links for RNA5SP197 Gene

GeneLoc Exon Structure for
RNA5SP197
ECgene alternative splicing isoforms for
RNA5SP197

Expression for RNA5SP197 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP197 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP197 Gene:

RNA5SP197
genes like me logo Genes that share expression patterns with RNA5SP197: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP197 Gene

Orthologs for RNA5SP197 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP197 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 34
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 71 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 68 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 34
  • 68 (a)
OneToOne
Species where no ortholog for RNA5SP197 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP197 Gene

ENSEMBL:
Gene Tree for RNA5SP197 (if available)
TreeFam:
Gene Tree for RNA5SP197 (if available)

Paralogs for RNA5SP197 Gene

No data available for Paralogs for RNA5SP197 Gene

Variants for RNA5SP197 Gene

Relevant External Links for RNA5SP197 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP197

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP197 Gene

Disorders for RNA5SP197 Gene

No disorders were found for RNA5SP197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP197 Gene

Publications for RNA5SP197 Gene

No publications were found for RNA5SP197 Gene.

Products for RNA5SP197 Gene

Sources for RNA5SP197 Gene

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