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Aliases for RNA5SP183 Gene

Subcategory (RNA class) for RNA5SP183 Gene

rRNA

Aliases for RNA5SP183 Gene

  • RNA, 5S Ribosomal Pseudogene 183 2 3 5
  • RNA, 5S Ribosomal 183 2 3
  • RN5S183 3

External Ids for RNA5SP183 Gene

ORGUL Members for RNA5SP183 Gene

Previous HGNC Symbols for RNA5SP183 Gene

  • RN5S183

Previous GeneCards Identifiers for RNA5SP183 Gene

  • GC05P055074

Summaries for RNA5SP183 Gene

GeneCards Summary for RNA5SP183 Gene

RNA5SP183 (RNA, 5S Ribosomal Pseudogene 183) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP183 Gene

Genomics for RNA5SP183 Gene

Regulatory Elements for RNA5SP183 Gene

Enhancers for RNA5SP183 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F055226 0.7 ENCODE 16.2 -550.4 -550354 2.2 ATF1 PKNOX1 ZNF133 ARID4B SIN3A GLI4 ZNF2 ZNF121 GLIS2 ZNF143 ENSG00000249016 RNA5SP183 HNRNPH1P3 LINC01033 LOC105378973 CCNO MCIDAS PIR50338
GH05F056122 1.1 Ensembl ENCODE 16.2 +348.3 348280 7.1 PKNOX1 ARNT MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 HNRNPH1P3 RNA5SP183 ENSG00000271828 ENSG00000238326 RNU6-299P RPL17P22
GH05F056615 1.1 Ensembl 16.2 +838.6 838632 1.8 CTCF SIX4 NR4A1 ZNF175 PTTG1 CEBPG ZNF645 HDAC8 NR2F2 ZNF589 HNRNPH1P3 RNA5SP183 LINC01948 MAP3K1 C5orf67 ENSG00000228650
GH05F055680 0.4 Ensembl 11.2 -97.0 -96969 0.2 ZNF366 NFE2 DDX4 PLPP1 RNF138P1 SLC38A9 RNA5SP183 DHX29 SKIV2L2 GC05P055648
GH05F055821 0.5 Ensembl 10.8 +44.5 44533 0.8 SMARCA4 POLR2A RNA5SP183 SLC38A9 DDX4 HNRNPH1P3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RNA5SP183 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP183 Gene

Chromosome:
5
Start:
55,777,469 bp from pter
End:
55,777,587 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for RNA5SP183 Gene

Genes around RNA5SP183 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP183 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP183 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP183 Gene

Proteins for RNA5SP183 Gene

Post-translational modifications for RNA5SP183 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP183 Gene

Domains & Families for RNA5SP183 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP183 Gene

Function for RNA5SP183 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP183 Gene

Localization for RNA5SP183 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP183 Gene

Pathways & Interactions for RNA5SP183 Gene

SuperPathways for RNA5SP183 Gene

No Data Available

Interacting Proteins for RNA5SP183 Gene

Gene Ontology (GO) - Biological Process for RNA5SP183 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP183 Gene

Transcripts for RNA5SP183 Gene

mRNA/cDNA for RNA5SP183 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP183 Gene

No ASD Table

Relevant External Links for RNA5SP183 Gene

GeneLoc Exon Structure for
RNA5SP183
ECgene alternative splicing isoforms for
RNA5SP183

Expression for RNA5SP183 Gene

mRNA expression in normal human tissues for RNA5SP183 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP183 Gene:

RNA5SP183
genes like me logo Genes that share expression patterns with RNA5SP183: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP183 Gene

Orthologs for RNA5SP183 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP183 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35 35
  • 79 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia n-R5s43 35
  • 76 (a)
ManyToMany
n-R5s74 35
  • 71 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 75 (a)
ManyToMany
Species where no ortholog for RNA5SP183 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP183 Gene

ENSEMBL:
Gene Tree for RNA5SP183 (if available)
TreeFam:
Gene Tree for RNA5SP183 (if available)

Paralogs for RNA5SP183 Gene

No data available for Paralogs for RNA5SP183 Gene

Variants for RNA5SP183 Gene

Relevant External Links for RNA5SP183 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP183

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP183 Gene

Disorders for RNA5SP183 Gene

No disorders were found for RNA5SP183 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP183 Gene

Publications for RNA5SP183 Gene

No publications were found for RNA5SP183 Gene.

Products for RNA5SP183 Gene

Sources for RNA5SP183 Gene

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