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Aliases for RNA5SP171 Gene

Subcategory (RNA class) for RNA5SP171 Gene

rRNA

Aliases for RNA5SP171 Gene

  • RNA, 5S Ribosomal Pseudogene 171 2 3 5
  • RNA, 5S Ribosomal 171 2 3
  • RN5S171 3

External Ids for RNA5SP171 Gene

ORGUL Members for RNA5SP171 Gene

Previous HGNC Symbols for RNA5SP171 Gene

  • RN5S171

Previous GeneCards Identifiers for RNA5SP171 Gene

  • GC04M167841

Summaries for RNA5SP171 Gene

GeneCards Summary for RNA5SP171 Gene

RNA5SP171 (RNA, 5S Ribosomal Pseudogene 171) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP171 Gene

Genomics for RNA5SP171 Gene

Regulatory Elements for RNA5SP171 Gene

Enhancers for RNA5SP171 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F166988 0.4 FANTOM5 0.2 -70.6 -70577 0.2 MAFK SPOCK3 RNA5SP171 GC04M166919 GC04P167098
GH04F167030 0.8 Ensembl ENCODE 0.1 -113.7 -113677 2.5 ZNF585B JUN CEBPB STAT3 EP300 ATF2 SPOCK3 GC04P167098 GC04M166919 RNA5SP171
GH04F167021 0.6 ENCODE 0.1 -103.3 -103267 0.1 CTCF ZNF654 SMC3 TRIM22 RAD21 SPOCK3 GC04P167098 RNA5SP171 GC04M166919
GH04F166816 0.4 FANTOM5 0.1 +101.6 101570 0.2 STAT3 GC04M166742 RNA5SP171 GC04M166919
GH04F167045 0.4 FANTOM5 0.1 -127.5 -127536 0.5 ATF2 SPOCK3 GC04P167098 GC04M166919 RNA5SP171
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP171 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP171 Gene

Chromosome:
4
Start:
166,918,364 bp from pter
End:
166,918,478 bp from pter
Size:
115 bases
Orientation:
Minus strand

Genomic View for RNA5SP171 Gene

Genes around RNA5SP171 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP171 Gene

Proteins for RNA5SP171 Gene

Post-translational modifications for RNA5SP171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP171 Gene

Domains & Families for RNA5SP171 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP171 Gene

Function for RNA5SP171 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP171 Gene

Localization for RNA5SP171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP171 Gene

Pathways & Interactions for RNA5SP171 Gene

SuperPathways for RNA5SP171 Gene

No Data Available

Interacting Proteins for RNA5SP171 Gene

Gene Ontology (GO) - Biological Process for RNA5SP171 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP171 Gene

Transcripts for RNA5SP171 Gene

mRNA/cDNA for RNA5SP171 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP171 Gene

No ASD Table

Relevant External Links for RNA5SP171 Gene

GeneLoc Exon Structure for
RNA5SP171
ECgene alternative splicing isoforms for
RNA5SP171

Expression for RNA5SP171 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5SP171 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP171 Gene:

RNA5SP171
genes like me logo Genes that share expression patterns with RNA5SP171: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5SP171 Gene

Orthologs for RNA5SP171 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP171 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24876 35
  • 68 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 64 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 58 (a)
OneToMany
Species where no ortholog for RNA5SP171 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP171 Gene

ENSEMBL:
Gene Tree for RNA5SP171 (if available)
TreeFam:
Gene Tree for RNA5SP171 (if available)

Paralogs for RNA5SP171 Gene

No data available for Paralogs for RNA5SP171 Gene

Variants for RNA5SP171 Gene

Relevant External Links for RNA5SP171 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP171

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP171 Gene

Disorders for RNA5SP171 Gene

No disorders were found for RNA5SP171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP171 Gene

Publications for RNA5SP171 Gene

No publications were found for RNA5SP171 Gene.

Products for RNA5SP171 Gene

Sources for RNA5SP171 Gene

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