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Aliases for RNA5SP159 Gene

Aliases for RNA5SP159 Gene

  • RNA, 5S Ribosomal Pseudogene 159 2 3 5
  • RNA, 5S Ribosomal 159 2 3
  • RN5S159 3

External Ids for RNA5SP159 Gene

Previous HGNC Symbols for RNA5SP159 Gene

  • RN5S159

Summaries for RNA5SP159 Gene

GeneCards Summary for RNA5SP159 Gene

RNA5SP159 (RNA, 5S Ribosomal Pseudogene 159) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP159 Gene

Genomics for RNA5SP159 Gene

Regulatory Elements for RNA5SP159 Gene

Enhancers for RNA5SP159 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G039931 0.9 Ensembl ENCODE 0.7 -3.9 -3923 3.4 FEZF1 PRDM6 RAD51 NBN IRF1 RELB MLLT1 ZBTB33 ZNF600 PRDM1 N4BP2 KRT18P25 PDS5A RNA5SP159 ELOCP33
GH04G039945 1 Ensembl ENCODE 0.4 +10.1 10081 2.7 HDGF MTA2 TRIM22 CEBPB CEBPG EBF1 DPF2 TBX21 RELA ARID3A PDS5A N4BP2 LOC344967 RNA5SP159 PABPC1P1
GH04G039970 1.1 Ensembl ENCODE 0.3 +34.3 34330 1.3 HDAC1 HDGF PKNOX1 ATF1 TBL1XR1 TCF12 EGR1 IKZF2 CREM EGR2 LOC105374419 SMIM14 N4BP2 PABPC1P1 RNA5SP159
GH04G039936 0.4 ENCODE 0.7 +0.6 618 0.9 TEAD4 MLLT1 RNA5SP159 PABPC1P1
GH04G039942 0.6 ENCODE 0.4 +5.8 5833 0.6 MTA2 CEBPB ZNF664 ATF3 IKZF1 EED ZBTB33 IKZF2 PDS5A RNA5SP159 PABPC1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP159 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP159 Gene

Chromosome:
4
Start:
39,936,753 bp from pter
End:
39,936,855 bp from pter
Size:
103 bases
Orientation:
Plus strand

Genomic View for RNA5SP159 Gene

Genes around RNA5SP159 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP159 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP159 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP159 Gene

Proteins for RNA5SP159 Gene

Post-translational modifications for RNA5SP159 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP159 Gene

Domains & Families for RNA5SP159 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP159 Gene

Function for RNA5SP159 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP159 Gene

Localization for RNA5SP159 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP159 Gene

Pathways & Interactions for RNA5SP159 Gene

SuperPathways for RNA5SP159 Gene

No Data Available

Interacting Proteins for RNA5SP159 Gene

Gene Ontology (GO) - Biological Process for RNA5SP159 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP159 Gene

Transcripts for RNA5SP159 Gene

mRNA/cDNA for RNA5SP159 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP159 Gene

No ASD Table

Relevant External Links for RNA5SP159 Gene

GeneLoc Exon Structure for
RNA5SP159
ECgene alternative splicing isoforms for
RNA5SP159

Expression for RNA5SP159 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP159 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP159 Gene:

RNA5SP159
genes like me logo Genes that share expression patterns with RNA5SP159: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP159 Gene

Orthologs for RNA5SP159 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RNA5SP159 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 53 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22076 35
  • 37 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 5S_rRNA 35
  • 50 (a)
OneToOne
Species where no ortholog for RNA5SP159 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP159 Gene

ENSEMBL:
Gene Tree for RNA5SP159 (if available)
TreeFam:
Gene Tree for RNA5SP159 (if available)

Paralogs for RNA5SP159 Gene

No data available for Paralogs for RNA5SP159 Gene

Variants for RNA5SP159 Gene

Relevant External Links for RNA5SP159 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP159

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP159 Gene

Disorders for RNA5SP159 Gene

No disorders were found for RNA5SP159 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP159 Gene

Publications for RNA5SP159 Gene

No publications were found for RNA5SP159 Gene.

Products for RNA5SP159 Gene

Sources for RNA5SP159 Gene

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