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Aliases for RNA5SP137 Gene

Aliases for RNA5SP137 Gene

  • RNA, 5S Ribosomal Pseudogene 137 2 3 5
  • RNA, 5S Ribosomal 137 2 3
  • RN5S137 3

External Ids for RNA5SP137 Gene

Previous HGNC Symbols for RNA5SP137 Gene

  • RN5S137

Previous GeneCards Identifiers for RNA5SP137 Gene

  • GC03M124780

Summaries for RNA5SP137 Gene

GeneCards Summary for RNA5SP137 Gene

RNA5SP137 (RNA, 5S Ribosomal Pseudogene 137) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP137 Gene

Genomics for RNA5SP137 Gene

Regulatory Elements for RNA5SP137 Gene

Enhancers for RNA5SP137 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G125060 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.4 -4410 4.0 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ELK1 GATA2 FOS HEG1 ITGB5 RNA5SP137 GC03M125120
GH03G125059 0.8 ENCODE dbSUPER 0.7 -1.2 -1174 0.2 SREBF1 CTCF CUX1 ZIC2 RNA5SP137 GC03M125120
GH03G125058 0.7 ENCODE dbSUPER 0.7 -0.3 -254 0.2 GATA3 ZNF600 RNA5SP137 GC03M125120
GH03G125115 1.6 Ensembl ENCODE dbSUPER 0.2 -60.4 -60375 6.4 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 FOS SLC12A8 HEG1 RNU6-232P GC03M125120 RNA5SP137
GH03G125066 0.7 ENCODE 0.4 -8.9 -8888 1.2 CTCF PKNOX1 KLF4 RAD21 FOXA1 FOSL1 CTBP1 GATA3 CREB1 SMC3 RNA5SP137 GC03M125120
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP137 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP137 Gene

Chromosome:
3
Start:
125,058,304 bp from pter
End:
125,058,438 bp from pter
Size:
135 bases
Orientation:
Minus strand

Genomic View for RNA5SP137 Gene

Genes around RNA5SP137 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP137 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP137 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP137 Gene

Proteins for RNA5SP137 Gene

Post-translational modifications for RNA5SP137 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP137 Gene

Domains & Families for RNA5SP137 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP137 Gene

Function for RNA5SP137 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP137 Gene

Localization for RNA5SP137 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP137 Gene

Pathways & Interactions for RNA5SP137 Gene

SuperPathways for RNA5SP137 Gene

No Data Available

Interacting Proteins for RNA5SP137 Gene

Gene Ontology (GO) - Biological Process for RNA5SP137 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP137 Gene

Drugs & Compounds for RNA5SP137 Gene

No Compound Related Data Available

Transcripts for RNA5SP137 Gene

mRNA/cDNA for RNA5SP137 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP137 Gene

No ASD Table

Relevant External Links for RNA5SP137 Gene

GeneLoc Exon Structure for
RNA5SP137
ECgene alternative splicing isoforms for
RNA5SP137

Expression for RNA5SP137 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP137 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP137 Gene:

RNA5SP137
genes like me logo Genes that share expression patterns with RNA5SP137: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP137 Gene

Orthologs for RNA5SP137 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP137 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 99 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 68 (a)
OneToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 67 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 66 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s157 35
  • 61 (a)
ManyToMany
Species where no ortholog for RNA5SP137 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP137 Gene

ENSEMBL:
Gene Tree for RNA5SP137 (if available)
TreeFam:
Gene Tree for RNA5SP137 (if available)

Paralogs for RNA5SP137 Gene

No data available for Paralogs for RNA5SP137 Gene

Variants for RNA5SP137 Gene

Relevant External Links for RNA5SP137 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP137

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP137 Gene

Disorders for RNA5SP137 Gene

No disorders were found for RNA5SP137 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP137 Gene

Publications for RNA5SP137 Gene

No publications were found for RNA5SP137 Gene.

Products for RNA5SP137 Gene

Sources for RNA5SP137 Gene

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