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Aliases for RNA5SP122 Gene

Subcategory (RNA class) for RNA5SP122 Gene

rRNA

Aliases for RNA5SP122 Gene

  • RNA, 5S Ribosomal Pseudogene 122 2 3 5
  • RNA, 5S Ribosomal 122 2 3
  • RN5S122 3

External Ids for RNA5SP122 Gene

ORGUL Members for RNA5SP122 Gene

Previous HGNC Symbols for RNA5SP122 Gene

  • RN5S122

Previous GeneCards Identifiers for RNA5SP122 Gene

  • GC02P242526

Summaries for RNA5SP122 Gene

GeneCards Summary for RNA5SP122 Gene

RNA5SP122 (RNA, 5S Ribosomal Pseudogene 122) is a Pseudogene, and is affiliated with the rRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5SP122 Gene

Genomics for RNA5SP122 Gene

Regulatory Elements for RNA5SP122 Gene

Enhancers for RNA5SP122 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G241609 1.9 FANTOM5 Ensembl ENCODE dbSUPER 7.3 +25.3 25280 2.1 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ELK1 BOK BOK-AS1 ANO7 ENSG00000235351 RNA5SP122 ATG4B
GH02G241616 1.2 ENCODE dbSUPER 7.4 +34.0 34039 4.1 HDGF PKNOX1 GLI4 YY1 ETS1 ZNF143 FOS SP3 YY2 TSHZ1 SNED1 ENSG00000223374 ENSG00000235351 BOK ING5 DTYMK LOC100422094 PASK PPP1R7 FARP2
GH02G241641 1 Ensembl ENCODE 6.5 +57.0 57033 0.8 SOX13 CTCF MXI1 SAP130 ARID4B RAD21 THRB RARA NR2F6 GATAD2A D2HGDH ENSG00000234793 ING5 RNA5SP122 ENSG00000235351 THAP4 GC02M241661
GH02G241635 1.1 ENCODE 5.4 +52.6 52635 4.0 HNRNPUL1 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 ZNF207 BOK THAP4 ATG4B RNA5SP122 ING5 GC02M241661
GH02G241611 0.6 ENCODE 7.3 +27.8 27847 1.9 KLF1 BHLHE40 KLF17 ZNF600 FOXP2 PRDM1 ZNF7 BOK BOK-AS1 ANO7 RNA5SP122 ATG4B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RNA5SP122 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5SP122 Gene

Chromosome:
2
Start:
241,584,968 bp from pter
End:
241,585,075 bp from pter
Size:
108 bases
Orientation:
Plus strand

Genomic View for RNA5SP122 Gene

Genes around RNA5SP122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5SP122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5SP122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5SP122 Gene

Proteins for RNA5SP122 Gene

Post-translational modifications for RNA5SP122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5SP122 Gene

Domains & Families for RNA5SP122 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5SP122 Gene

Function for RNA5SP122 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5SP122 Gene

Localization for RNA5SP122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5SP122 Gene

Pathways & Interactions for RNA5SP122 Gene

SuperPathways for RNA5SP122 Gene

No Data Available

Interacting Proteins for RNA5SP122 Gene

Gene Ontology (GO) - Biological Process for RNA5SP122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5SP122 Gene

Transcripts for RNA5SP122 Gene

mRNA/cDNA for RNA5SP122 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5SP122 Gene

No ASD Table

Relevant External Links for RNA5SP122 Gene

GeneLoc Exon Structure for
RNA5SP122
ECgene alternative splicing isoforms for
RNA5SP122

Expression for RNA5SP122 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5SP122 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5SP122 Gene:

RNA5SP122
genes like me logo Genes that share expression patterns with RNA5SP122: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5SP122 Gene

Orthologs for RNA5SP122 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5SP122 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 75 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 65 (a)
ManyToMany
Species where no ortholog for RNA5SP122 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5SP122 Gene

ENSEMBL:
Gene Tree for RNA5SP122 (if available)
TreeFam:
Gene Tree for RNA5SP122 (if available)

Paralogs for RNA5SP122 Gene

No data available for Paralogs for RNA5SP122 Gene

Variants for RNA5SP122 Gene

Relevant External Links for RNA5SP122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5SP122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5SP122 Gene

Disorders for RNA5SP122 Gene

No disorders were found for RNA5SP122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5SP122 Gene

Publications for RNA5SP122 Gene

No publications were found for RNA5SP122 Gene.

Products for RNA5SP122 Gene

Sources for RNA5SP122 Gene

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