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Aliases for RNA5S9 Gene

Subcategory (RNA class) for RNA5S9 Gene

rRNA

Quality Score for this RNA gene is

3

Aliases for RNA5S9 Gene

  • RNA, 5S Ribosomal 9 2 3 5
  • 5S RRNA 9 2 3
  • RN5S9 3

External Ids for RNA5S9 Gene

ORGUL Members for RNA5S9 Gene

Previous HGNC Symbols for RNA5S9 Gene

  • RN5S9

Previous GeneCards Identifiers for RNA5S9 Gene

  • GC01M228764

Summaries for RNA5S9 Gene

GeneCards Summary for RNA5S9 Gene

RNA5S9 (RNA, 5S Ribosomal 9) is an RNA Gene, and is affiliated with the rRNA class. Among its related pathways are Ribosome biogenesis in eukaryotes and Viral mRNA Translation.

Additional gene information for RNA5S9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5S9 Gene

Genomics for RNA5S9 Gene

Regulatory Elements for RNA5S9 Gene


Promoters for RNA5S9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000257133 -134 801

Genomic Location for RNA5S9 Gene

Chromosome:
1
Start:
228,628,146 bp from pter
End:
228,628,266 bp from pter
Size:
121 bases
Orientation:
Minus strand

Genomic View for RNA5S9 Gene

Genes around RNA5S9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5S9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5S9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5S9 Gene

Proteins for RNA5S9 Gene

Post-translational modifications for RNA5S9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5S9 Gene

Domains & Families for RNA5S9 Gene

Gene Families for RNA5S9 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNA5S9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5S9 Gene

Function for RNA5S9 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5S9
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5S9 Gene

Localization for RNA5S9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5S9 Gene

Pathways & Interactions for RNA5S9 Gene

genes like me logo Genes that share pathways with RNA5S9: view

Pathways by source for RNA5S9 Gene

2 KEGG pathways for RNA5S9 Gene

Interacting Proteins for RNA5S9 Gene

Gene Ontology (GO) - Biological Process for RNA5S9 Gene

None

No data available for SIGNOR curated interactions for RNA5S9 Gene

Drugs & Compounds for RNA5S9 Gene

No Compound Related Data Available

Transcripts for RNA5S9 Gene

mRNA/cDNA for RNA5S9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RNA5S9
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5S9 Gene

No ASD Table

Relevant External Links for RNA5S9 Gene

GeneLoc Exon Structure for
RNA5S9
ECgene alternative splicing isoforms for
RNA5S9

Expression for RNA5S9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5S9 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5S9 Gene:

RNA5S9
genes like me logo Genes that share expression patterns with RNA5S9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5S9 Gene

Orthologs for RNA5S9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5S9 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia n-R5s113 34
  • 99 (a)
OneToMany
n-R5s146 34
  • 99 (a)
OneToMany
n-R5s112 34
  • 98 (a)
OneToMany
n-R5s120 34
  • 98 (a)
OneToMany
n-R5s125 34
  • 98 (a)
OneToMany
n-R5s109 34
  • 97 (a)
OneToMany
n-R5s115 34
  • 97 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 5S_rRNA 34
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 34
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 5S_rRNA 34
  • 92 (a)
OneToOne
Species where no ortholog for RNA5S9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5S9 Gene

ENSEMBL:
Gene Tree for RNA5S9 (if available)
TreeFam:
Gene Tree for RNA5S9 (if available)

Paralogs for RNA5S9 Gene

No data available for Paralogs for RNA5S9 Gene

Variants for RNA5S9 Gene

Sequence variations from dbSNP and Humsavar for RNA5S9 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111971519 -- 228,629,454(+) GAGAT(C/T)TGCAG upstream-variant-2KB
rs112835134 -- 228,629,237(+) GCTCC(C/G)TTAGG upstream-variant-2KB
rs113005970 -- 228,629,238(+) CTCCG(A/T)TAGGC upstream-variant-2KB
rs374577233 -- 228,627,801(+) GCAGC(C/G)GGGAA downstream-variant-500B, upstream-variant-2KB
rs78727137 -- 228,628,162(+) CACCC(A/G)GTATT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RNA5S9 Gene

Variant ID Type Subtype PubMed ID
dgv287n106 CNV duplication 24896259
esv24714 CNV gain+loss 19812545
esv32853 CNV gain 17666407
nsv1013500 CNV gain 25217958
nsv1075809 CNV duplication 25765185
nsv509635 CNV insertion 20534489
nsv511020 OTHER complex 20534489
nsv827075 CNV loss 20364138
nsv945355 CNV duplication 23825009
nsv952144 CNV duplication 24416366

Relevant External Links for RNA5S9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5S9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNA5S9 Gene

Disorders for RNA5S9 Gene

Relevant External Links for RNA5S9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RNA5S9

No disorders were found for RNA5S9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RNA5S9 Gene

Publications for RNA5S9 Gene

No publications were found for RNA5S9 Gene.

Products for RNA5S9 Gene

Sources for RNA5S9 Gene

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