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Aliases for RNA5S5 Gene

Subcategory (RNA class) for RNA5S5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNA5S5 Gene

  • RNA, 5S Ribosomal 5 2 3 5
  • RN5S5 3

External Ids for RNA5S5 Gene

Previous HGNC Symbols for RNA5S5 Gene

  • RN5S5

Previous GeneCards Identifiers for RNA5S5 Gene

  • GC01M228755

Summaries for RNA5S5 Gene

GeneCards Summary for RNA5S5 Gene

RNA5S5 (RNA, 5S Ribosomal 5) is an RNA Gene, and is affiliated with the non-coding RNA class. Among its related pathways are Viral mRNA Translation and Ribosome biogenesis in eukaryotes.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5S5 Gene

Genomics for RNA5S5 Gene

Genomic Location for RNA5S5 Gene

Chromosome:
1
Start:
228,619,230 bp from pter
End:
228,619,350 bp from pter
Size:
121 bases
Orientation:
Minus strand

Genomic View for RNA5S5 Gene

Genes around RNA5S5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5S5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5S5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5S5 Gene

No data available for Regulatory Elements for RNA5S5 Gene

Proteins for RNA5S5 Gene

Post-translational modifications for RNA5S5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5S5 Gene

Domains & Families for RNA5S5 Gene

Gene Families for RNA5S5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNA5S5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5S5 Gene

Function for RNA5S5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5S5 Gene

Localization for RNA5S5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5S5 Gene

Pathways & Interactions for RNA5S5 Gene

genes like me logo Genes that share pathways with RNA5S5: view

Pathways by source for RNA5S5 Gene

2 KEGG pathways for RNA5S5 Gene

Interacting Proteins for RNA5S5 Gene

Gene Ontology (GO) - Biological Process for RNA5S5 Gene

None

No data available for SIGNOR curated interactions for RNA5S5 Gene

Transcripts for RNA5S5 Gene

mRNA/cDNA for RNA5S5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5S5 Gene

No ASD Table

Relevant External Links for RNA5S5 Gene

GeneLoc Exon Structure for
RNA5S5
ECgene alternative splicing isoforms for
RNA5S5

Expression for RNA5S5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RNA5S5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RNA5S5 Gene:

RNA5S5
genes like me logo Genes that share expression patterns with RNA5S5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RNA5S5 Gene

Orthologs for RNA5S5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5S5 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia 5S_rRNA 35
  • 100 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 35
  • 100 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s118 35
  • 99 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 35
  • 91 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 35
  • 84 (a)
ManyToMany
Species where no ortholog for RNA5S5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5S5 Gene

ENSEMBL:
Gene Tree for RNA5S5 (if available)
TreeFam:
Gene Tree for RNA5S5 (if available)

Paralogs for RNA5S5 Gene

No data available for Paralogs for RNA5S5 Gene

Variants for RNA5S5 Gene

Sequence variations from dbSNP and Humsavar for RNA5S5 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs112069526 -- 228,621,222(+) CGGCT(A/C)ACAGG downstream-variant-500B, upstream-variant-2KB
rs112443868 -- 228,619,720(+) CGCGC(C/G)GGGCC upstream-variant-2KB
rs145056430 -- 228,620,912(+) TGCCC(A/T)CCCAG upstream-variant-2KB
rs367987570 -- 228,621,100(+) GCAGC(C/G)GGGAA downstream-variant-500B, upstream-variant-2KB
rs370326559 -- 228,620,960(+) CTGCC(A/C/G)GGCCG downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RNA5S5 Gene

Variant ID Type Subtype PubMed ID
dgv287n106 CNV duplication 24896259
dgv9n6 CNV deletion 16902084
esv24714 CNV gain+loss 19812545
esv32853 CNV gain 17666407
nsv1013500 CNV gain 25217958
nsv1075809 CNV duplication 25765185
nsv160594 CNV deletion 16902084
nsv509635 CNV insertion 20534489
nsv511020 OTHER complex 20534489
nsv827075 CNV loss 20364138
nsv945355 CNV duplication 23825009
nsv952144 CNV duplication 24416366

Relevant External Links for RNA5S5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5S5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RNA5S5 Gene

Disorders for RNA5S5 Gene

No disorders were found for RNA5S5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5S5 Gene

Publications for RNA5S5 Gene

No publications were found for RNA5S5 Gene.

Products for RNA5S5 Gene

Sources for RNA5S5 Gene

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