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Aliases for RNA5S13 Gene

Subcategory (RNA class) for RNA5S13 Gene

rRNA

Quality Score for this RNA gene is

3

Aliases for RNA5S13 Gene

  • RNA, 5S Ribosomal 13 2 3
  • RN5S13 3

External Ids for RNA5S13 Gene

ORGUL Members for RNA5S13 Gene

Previous HGNC Symbols for RNA5S13 Gene

  • RN5S13

Previous GeneCards Identifiers for RNA5S13 Gene

  • GC01M228835
  • GC01M228844
  • GC01M228850
  • GC01M228860

Summaries for RNA5S13 Gene

GeneCards Summary for RNA5S13 Gene

RNA5S13 (RNA, 5S Ribosomal 13) is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5S13 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5S13 Gene

Genomics for RNA5S13 Gene

Genomic Location for RNA5S13 Gene

Start:
228,637,094 bp from pter
End:
228,637,214 bp from pter
Size:
121 bases
Orientation:
Minus strand

Genomic View for RNA5S13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNA5S13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5S13 Gene

No data available for Regulatory Elements for RNA5S13 Gene

Proteins for RNA5S13 Gene

Post-translational modifications for RNA5S13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5S13 Gene

Domains for RNA5S13 Gene

Gene Families for RNA5S13 Gene

HGNC:
  • RRNA :ncRNAs / Ribosomal RNA genes

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNA5S13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5S13 Gene

Function for RNA5S13 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNA5S13 Gene

Localization for RNA5S13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5S13 Gene

Pathways for RNA5S13 Gene

SuperPathways for RNA5S13 Gene

No Data Available

Interacting Proteins for RNA5S13 Gene

Gene Ontology (GO) - Biological Process for RNA5S13 Gene

None

No data available for Pathways by source for RNA5S13 Gene

Transcripts for RNA5S13 Gene

mRNA/cDNA for RNA5S13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for RNA5S13

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5S13 Gene

No ASD Table

Relevant External Links for RNA5S13 Gene

GeneLoc Exon Structure for
RNA5S13
ECgene alternative splicing isoforms for
RNA5S13

Expression for RNA5S13 Gene

mRNA expression in normal human tissues for RNA5S13 Gene

genes like me logo Genes that share expressions with RNA5S13: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RNA5S13 Gene

Orthologs for RNA5S13 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5S13 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia n-R5s123 36
  • 100 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 36
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 36
  • 99 (a)
ManyToMany
Species with no ortholog for RNA5S13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5S13 Gene

ENSEMBL:
Gene Tree for RNA5S13 (if available)
TreeFam:
Gene Tree for RNA5S13 (if available)

Paralogs for RNA5S13 Gene

No data available for Paralogs for RNA5S13 Gene

Variants for RNA5S13 Gene

Sequence variations from dbSNP and Humsavar for RNA5S13 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs138893732 -- 228,637,837(+) GCGGA(-/CT)CACAC upstream-variant-2KB
rs139372402 -- 228,637,838(+) CGGAC(A/T)CACAC upstream-variant-2KB
rs140852669 -- 228,638,540(+) GCCTG(C/T)TTTCC upstream-variant-2KB
rs142318040 -- 228,637,940(+) TGGAT(C/G)GAGAG upstream-variant-2KB
rs142353687 -- 228,637,855(+) ACACA(-/GA)CACAC upstream-variant-2KB

Relevant External Links for RNA5S13 Gene

HapMap Linkage Disequilibrium report
RNA5S13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for RNA5S13 Gene

Disorders for RNA5S13 Gene

No disorders were found for RNA5S13 Gene.

No data available for UniProtKB/Swiss-Prot for RNA5S13 Gene

Publications for RNA5S13 Gene

No publications were found for RNA5S13 Gene.

Products for RNA5S13 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNA5S13
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNA5S13
    • Block miRNA regulation of RNA5S13 using miScript Target Protectors

    Sources for RNA5S13 Gene

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