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Aliases for RNA5S11 Gene

Subcategory (RNA class) for RNA5S11 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RNA5S11 Gene

  • RNA, 5S Ribosomal 11 2 3 5
  • RN5S11 3

External Ids for RNA5S11 Gene

Previous HGNC Symbols for RNA5S11 Gene

  • RN5S11

Previous GeneCards Identifiers for RNA5S11 Gene

  • GC01M228769
  • GC01M228642
  • GC01M228656

Summaries for RNA5S11 Gene

GeneCards Summary for RNA5S11 Gene

RNA5S11 (RNA, 5S Ribosomal 11) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RNA5S11 Gene

Genomics for RNA5S11 Gene

Regulatory Elements for RNA5S11 Gene


Promoters for RNA5S11 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RNA5S11 on UCSC Golden Path with GeneCards custom track

Genomic Location for RNA5S11 Gene

Chromosome:
1
Start:
228,632,629 bp from pter
End:
228,632,749 bp from pter
Size:
121 bases
Orientation:
Minus strand

Genomic View for RNA5S11 Gene

Genes around RNA5S11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5S11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5S11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5S11 Gene

Proteins for RNA5S11 Gene

Post-translational modifications for RNA5S11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5S11 Gene

Domains & Families for RNA5S11 Gene

Gene Families for RNA5S11 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RNA5S11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5S11 Gene

Function for RNA5S11 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5S11 Gene

Localization for RNA5S11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RNA5S11 Gene

Pathways & Interactions for RNA5S11 Gene

SuperPathways for RNA5S11 Gene

No Data Available

Interacting Proteins for RNA5S11 Gene

Gene Ontology (GO) - Biological Process for RNA5S11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5S11 Gene

Drugs & Compounds for RNA5S11 Gene

No Compound Related Data Available

Transcripts for RNA5S11 Gene

mRNA/cDNA for RNA5S11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5S11 Gene

No ASD Table

Relevant External Links for RNA5S11 Gene

GeneLoc Exon Structure for
RNA5S11
ECgene alternative splicing isoforms for
RNA5S11

Expression for RNA5S11 Gene

mRNA expression in normal human tissues for RNA5S11 Gene

genes like me logo Genes that share expression patterns with RNA5S11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RNA5S11 Gene

Orthologs for RNA5S11 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5S11 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia 5S_rRNA 36
  • 100 (a)
OneToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 36
  • 100 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 36
  • 100 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia n-R5s111 36
  • 100 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 36
  • 100 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 36
  • 100 (a)
ManyToMany
Species with no ortholog for RNA5S11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5S11 Gene

ENSEMBL:
Gene Tree for RNA5S11 (if available)
TreeFam:
Gene Tree for RNA5S11 (if available)

Paralogs for RNA5S11 Gene

No data available for Paralogs for RNA5S11 Gene

Variants for RNA5S11 Gene

Sequence variations from dbSNP and Humsavar for RNA5S11 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs4233272 -- 228,633,475(+) TGGAT(C/G)GAGAG upstream-variant-2KB
rs4233273 -- 228,633,486(+) ATAGA(A/G)ACCGA upstream-variant-2KB
rs4595346 -- 228,633,389(+) CACAC(A/C)GACAC upstream-variant-2KB
rs4454514 -- 228,633,390(+) ACACA(C/G)ACACA upstream-variant-2KB
rs139807196 -- 228,633,373(+) CGGAC(A/T)CACAC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for RNA5S11 Gene

Disorders for RNA5S11 Gene

No disorders were found for RNA5S11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5S11 Gene

Publications for RNA5S11 Gene

No publications were found for RNA5S11 Gene.

Products for RNA5S11 Gene

Sources for RNA5S11 Gene

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