Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RNA5S1 Gene

Subcategory (RNA class) for RNA5S1 Gene

rRNA

Quality Score for this RNA gene is

3

Aliases for RNA5S1 Gene

  • RNA, 5S Ribosomal 1 2 3
  • RN5S1 3

External Ids for RNA5S1 Gene

ORGUL Members for RNA5S1 Gene

Previous Symbols for RNA5S1 Gene

  • RN5S1

Summaries for RNA5S1 Gene

GeneCards Summary for RNA5S1 Gene

RNA5S1 (RNA, 5S Ribosomal 1) is a RNA Gene, and belongs to rRNA RNA class.

fRNAdb sequence ontologies for RNA5S1 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5S1 Gene

Genomics for RNA5S1 Gene

Genomic Location for RNA5S1 Gene

Start:
228,610,266 bp from pter
End:
228,610,386 bp from pter
Size:
121 bases
Orientation:
Minus strand

Genomic View for RNA5S1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RNA5S1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5S1 Gene

No data available for Regulatory Elements for RNA5S1 Gene

Proteins for RNA5S1 Gene

Post-translational modifications for RNA5S1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5S1 Gene

Domains for RNA5S1 Gene

Gene Families for RNA5S1 Gene

HGNC:
  • RRNA :ncRNAs / Ribosomal RNA genes
genes like me logo Genes that share domains with RNA5S1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for RNA5S1 Gene

Function for RNA5S1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RNA5S1 Gene

Localization for RNA5S1 Gene

No data available for Gene Ontology (GO) - Cellular Components for RNA5S1 Gene

Pathways for RNA5S1 Gene

SuperPathways for RNA5S1 Gene

No Data Available

Interacting Proteins for RNA5S1 Gene

Gene Ontology (GO) - Biological Process for RNA5S1 Gene

None

No data available for Pathways by source for RNA5S1 Gene

Transcripts for RNA5S1 Gene

mRNA/cDNA for RNA5S1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5S1 Gene

No ASD Table

Relevant External Links for RNA5S1 Gene

GeneLoc Exon Structure for
RNA5S1
ECgene alternative splicing isoforms for
RNA5S1

Expression for RNA5S1 Gene

mRNA expression in normal human tissues for RNA5S1 Gene

genes like me logo Genes that share expressions with RNA5S1: view

Orthologs for RNA5S1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RNA5S1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 5S_rRNA 37
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia 5S_rRNA 37
  • 100 (a)
OneToMany
dog
(Canis familiaris)
Mammalia 5S_rRNA 37
  • 96 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22109 37
  • 100 (a)
ManyToMany
Gm26391 37
  • 100 (a)
ManyToMany
n-R5s100 37
  • 100 (a)
ManyToMany
n-R5s104 37
  • 100 (a)
ManyToMany
n-R5s105 37
  • 100 (a)
ManyToMany
n-R5s107 37
  • 100 (a)
ManyToMany
n-R5s110 37
  • 100 (a)
ManyToMany
n-R5s117 37
  • 100 (a)
ManyToMany
n-R5s121 37
  • 100 (a)
ManyToMany
n-R5s122 37
  • 100 (a)
ManyToMany
n-R5s136 37
  • 99 (a)
ManyToMany
n-R5s139 37
  • 100 (a)
ManyToMany
n-R5s141 37
  • 100 (a)
ManyToMany
n-R5s143 37
  • 100 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 5S_rRNA 37
  • 100 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia 5S_rRNA 37
  • 100 (a)
ManyToMany
Species with no ortholog for RNA5S1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RNA5S1 Gene

ENSEMBL:
Gene Tree for RNA5S1 (if available)
TreeFam:
Gene Tree for RNA5S1 (if available)

Paralogs for RNA5S1 Gene

No data available for Paralogs for RNA5S1 Gene

Variants for RNA5S1 Gene

Sequence variations from dbSNP and Humsavar for RNA5S1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs61825670 -- 228,610,193(+) GCCAC(C/T)GCACT downstream-variant-500B
rs112993805 -- 228,609,781(+) CTGCC(C/G)GGCCG downstream-variant-500B
rs138174331 -- 228,611,123(+) ATAGA(A/G)ACCGA upstream-variant-2KB
rs138284833 -- 228,609,836(+) GCTGC(A/G)GCGGG downstream-variant-500B
rs138324441 -- 228,610,519(+) GCCTT(-/C)CCCCG upstream-variant-2KB

Relevant External Links for RNA5S1 Gene

HapMap Linkage Disequilibrium report
RNA5S1

No data available for Structural Variations from Database of Genomic Variants (DGV) for RNA5S1 Gene

Disorders for RNA5S1 Gene

No disorders were found for RNA5S1 Gene.

No data available for UniProtKB/Swiss-Prot for RNA5S1 Gene

Publications for RNA5S1 Gene

No publications were found for RNA5S1 Gene.

Products for RNA5S1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RNA5S1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RNA5S1
    • Block miRNA regulation of RNA5S1 using miScript Target Protectors

    Sources for RNA5S1 Gene

    Back to Top

    Content