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Aliases for RNA5-8SP3 Gene

Subcategory (RNA class) for RNA5-8SP3 Gene

rRNA

Aliases for RNA5-8SP3 Gene

  • RNA, 5.8S Ribosomal Pseudogene 3 2 3
  • RNA, 5.8S Ribosomal 3 2
  • RN5-8S3 3

External Ids for RNA5-8SP3 Gene

ORGUL Members for RNA5-8SP3 Gene

Previous HGNC Symbols for RNA5-8SP3 Gene

  • RN5-8S3

Previous GeneCards Identifiers for RNA5-8SP3 Gene

  • GC09M111756

Summaries for RNA5-8SP3 Gene

GeneCards Summary for RNA5-8SP3 Gene

RNA5-8SP3 (RNA, 5.8S Ribosomal Pseudogene 3) is a Pseudogene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for RNA5-8SP3 Gene - the ORGUL cluster for this gene includes several descriptions:

  • rRNA_5_8S: 5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea.

  • 5.8S ribosomal RNA: 5.8S ribosomal RNA (5.8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation [2]. It is also known to form covalent linkage to the p53 tumour suppressor protein [3]. 5.8S rRNA is also found in archaea.

Additional gene information for RNA5-8SP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RNA5-8SP3 Gene

Genomics for RNA5-8SP3 Gene

GeneHancer (GH) Regulatory Elements for RNA5-8SP3 Gene

Promoters and enhancers for RNA5-8SP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I108991 Enhancer 0.4 ENCODE 550.8 +1.1 1080 0.8 PRDM10 ZXDB RNA5-8SP3 CTNNAL1 LOC105376216
GH09I108994 Enhancer 0.8 Ensembl ENCODE 0.8 -2.3 -2332 1.4 ZNF639 ATF1 ETV1 GABPA ZNF592 ZNF766 GABPB1 ZBTB33 ZFX CREM CTNNAL1 ENSG00000199331 MIR32 RNA5-8SP3 LOC105376216 GC09M109014 PIR44811
GH09I109000 Enhancer 0.7 Ensembl ENCODE 0.4 -8.9 -8870 1.1 JUND FOSL2 FOS KDM1A ZIC2 ENSG00000199331 MIR32 TMEM245 ELP1 RNA5-8SP3 GC09M109014 PIR44811 CTNNAL1 LOC105376216
GH09I108997 Enhancer 0.2 FANTOM5 0.8 -4.7 -4726 0.3 ENSG00000199331 MIR32 TMEM245 ELP1 RNA5-8SP3 LOC105376216 GC09M109014 PIR44811 CTNNAL1
GH09I109002 Enhancer 0.2 ENCODE 0.4 -9.8 -9787 0.2 ENSG00000199331 MIR32 ACTL7A TMEM245 RNA5-8SP3 PIR44811 GC09M109014 CTNNAL1 LOC105376216
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RNA5-8SP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RNA5-8SP3 Gene

Genomic Locations for RNA5-8SP3 Gene
chr9:108,992,409-108,992,569
(GRCh38/hg38)
Size:
161 bases
Orientation:
Minus strand
chr9:111,754,689-111,754,849
(GRCh37/hg19)

Genomic View for RNA5-8SP3 Gene

Genes around RNA5-8SP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RNA5-8SP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RNA5-8SP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RNA5-8SP3 Gene

ORGUL Member Location for RNA5-8SP3 Gene

ORGUL Member Location for RNA5-8SP3 gene

Proteins for RNA5-8SP3 Gene

Post-translational modifications for RNA5-8SP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RNA5-8SP3 Gene

Domains & Families for RNA5-8SP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RNA5-8SP3 Gene

Function for RNA5-8SP3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RNA5-8SP3 Gene

Localization for RNA5-8SP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RNA5-8SP3 Gene

Pathways & Interactions for RNA5-8SP3 Gene

SuperPathways for RNA5-8SP3 Gene

No Data Available

Interacting Proteins for RNA5-8SP3 Gene

Gene Ontology (GO) - Biological Process for RNA5-8SP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RNA5-8SP3 Gene

Drugs & Compounds for RNA5-8SP3 Gene

No Compound Related Data Available

Transcripts for RNA5-8SP3 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RNA5-8SP3 Gene

No ASD Table

Relevant External Links for RNA5-8SP3 Gene

GeneLoc Exon Structure for
RNA5-8SP3
ECgene alternative splicing isoforms for
RNA5-8SP3

No data available for mRNA/cDNA for RNA5-8SP3 Gene

Expression for RNA5-8SP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RNA5-8SP3 Gene

genes like me logo Genes that share expression patterns with RNA5-8SP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RNA5-8SP3 Gene

Orthologs for RNA5-8SP3 Gene

No data available for Orthologs and Evolution for RNA5-8SP3 Gene

Paralogs for RNA5-8SP3 Gene

No data available for Paralogs for RNA5-8SP3 Gene

Variants for RNA5-8SP3 Gene

Additional Variant Information for RNA5-8SP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RNA5-8SP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RNA5-8SP3 Gene

Disorders for RNA5-8SP3 Gene

No disorders were found for RNA5-8SP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RNA5-8SP3 Gene

Publications for RNA5-8SP3 Gene

  1. The European Large Subunit Ribosomal RNA Database. (PMID: 11125083) Wuyts J … De Wachter R (Nucleic acids research 2001) 1
  2. Role of the 5.8S rRNA in ribosome translocation. (PMID: 9108162) Abou Elela S … Nazar RN (Nucleic acids research 1997) 1
  3. Cytoplasmic p53 polypeptide is associated with ribosomes. (PMID: 9154813) Fontoura BM … Carroll RB (Molecular and cellular biology 1997) 1

Products for RNA5-8SP3 Gene

Sources for RNA5-8SP3 Gene

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