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Aliases for RN7SL89P Gene

Subcategory (RNA class) for RN7SL89P Gene

lncRNA

Aliases for RN7SL89P Gene

  • RNA, 7SL, Cytoplasmic 89, Pseudogene 2 3 5

External Ids for RN7SL89P Gene

ORGUL Members for RN7SL89P Gene

Previous GeneCards Identifiers for RN7SL89P Gene

  • GC04P106216

Summaries for RN7SL89P Gene

GeneCards Summary for RN7SL89P Gene

RN7SL89P (RNA, 7SL, Cytoplasmic 89, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL89P Gene

Genomics for RN7SL89P Gene

Regulatory Elements for RN7SL89P Gene

Enhancers for RN7SL89P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F105304 0.9 FANTOM5 Ensembl 0.4 +11.3 11337 0.8 MTA2 ZBED1 JUNB TBX21 ATF2 EP300 GABPA CBX5 TCF7 NBN TET2 RN7SL89P TET2-AS1
GH04F105306 1 FANTOM5 Ensembl ENCODE 0.4 +12.8 12760 0.4 PKNOX1 USF1 TBL1XR1 MAX EBF1 RELA ZFHX2 EGR1 CBX5 POLR2A TET2 PPA2 RN7SL89P TET2-AS1
GH04F105279 1 Ensembl ENCODE 0.4 -13.0 -12988 1.4 CTCF JUND ZNF654 POLR2A FOS RAD21 RN7SL89P TET2
GH04F105305 0.6 Ensembl 0.4 +12.2 12238 0.2 JUNB EBF1 CREM RELA PPA2 RN7SL89P TET2-AS1
GH04F105352 1.1 Ensembl ENCODE 0.2 +59.2 59166 1.3 PKNOX1 ESRRA ATF1 JUN BACH1 ZNF316 ETV6 NR2F6 NFE2 CREM PPA2 TET2-AS1 RN7SL89P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SL89P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL89P Gene

Chromosome:
4
Start:
105,293,664 bp from pter
End:
105,293,946 bp from pter
Size:
283 bases
Orientation:
Plus strand

Genomic View for RN7SL89P Gene

Genes around RN7SL89P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL89P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL89P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL89P Gene

Proteins for RN7SL89P Gene

Post-translational modifications for RN7SL89P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL89P Gene

Domains & Families for RN7SL89P Gene

Gene Families for RN7SL89P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL89P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL89P Gene

Function for RN7SL89P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL89P Gene

Localization for RN7SL89P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL89P Gene

Pathways & Interactions for RN7SL89P Gene

SuperPathways for RN7SL89P Gene

No Data Available

Interacting Proteins for RN7SL89P Gene

Gene Ontology (GO) - Biological Process for RN7SL89P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL89P Gene

Transcripts for RN7SL89P Gene

mRNA/cDNA for RN7SL89P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL89P Gene

No ASD Table

Relevant External Links for RN7SL89P Gene

GeneLoc Exon Structure for
RN7SL89P
ECgene alternative splicing isoforms for
RN7SL89P

Expression for RN7SL89P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL89P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL89P Gene:

RN7SL89P
genes like me logo Genes that share expression patterns with RN7SL89P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL89P Gene

Orthologs for RN7SL89P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL89P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 98 (a)
OneToOne
Species where no ortholog for RN7SL89P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL89P Gene

ENSEMBL:
Gene Tree for RN7SL89P (if available)
TreeFam:
Gene Tree for RN7SL89P (if available)

Paralogs for RN7SL89P Gene

No data available for Paralogs for RN7SL89P Gene

Variants for RN7SL89P Gene

Relevant External Links for RN7SL89P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL89P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL89P Gene

Disorders for RN7SL89P Gene

No disorders were found for RN7SL89P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL89P Gene

Publications for RN7SL89P Gene

No publications were found for RN7SL89P Gene.

Products for RN7SL89P Gene

Sources for RN7SL89P Gene

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