Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RN7SL832P Gene

Aliases for RN7SL832P Gene

  • RNA, 7SL, Cytoplasmic 832, Pseudogene 2 3 5

External Ids for RN7SL832P Gene

Previous GeneCards Identifiers for RN7SL832P Gene

  • GC02P010830

Summaries for RN7SL832P Gene

GeneCards Summary for RN7SL832P Gene

RN7SL832P (RNA, 7SL, Cytoplasmic 832, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL832P Gene

Genomics for RN7SL832P Gene

Regulatory Elements for RN7SL832P Gene

Enhancers for RN7SL832P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G010574 1 ENCODE dbSUPER 21.2 -114.2 -114194 2.9 JUN SIN3A ZNF140 FEZF1 FOSL1 ZNF121 GATA2 FOS MAFK ZNF639 NOL10 RN7SL832P ENSG00000234818 LOC105373426
GH02G010282 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5.6 -405.4 -405391 5.3 MLX ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF766 FOS SP3 SP5 RN7SL832P HPCAL1 RN7SL66P GC02M010296
GH02G010634 0.8 ENCODE 12.2 -55.2 -55181 2.2 CBX3 NFXL1 GATA4 GATA2 EGR1 CREM ZNF263 SP5 JUNB ZNF592 RN7SL832P ENSG00000234818 GC02P010687
GH02G010653 0.7 ENCODE 12.3 -36.2 -36175 1.3 HDAC1 NR2F1 JUN MAFG ZEB2 DPF2 ARID1B NFIC JUND ZNF316 RN7SL832P GC02P010687 ENSG00000234818
GH02G010658 0.6 ENCODE 12.3 -31.5 -31502 1.1 CTCF RFX1 ZNF740 HLF RAD21 JUND PRDM10 ZNF24 CREM MYC RN7SL832P NOL10 GC02P010687 ENSG00000234818
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL832P on UCSC Golden Path with GeneCards custom track

Promoters for RN7SL832P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000112814 -344 2000 HDGF CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143

Genomic Location for RN7SL832P Gene

Chromosome:
2
Start:
10,690,344 bp from pter
End:
10,692,099 bp from pter
Size:
1,756 bases
Orientation:
Plus strand

Genomic View for RN7SL832P Gene

Genes around RN7SL832P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL832P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL832P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL832P Gene

Proteins for RN7SL832P Gene

Post-translational modifications for RN7SL832P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL832P Gene

Domains & Families for RN7SL832P Gene

Gene Families for RN7SL832P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL832P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL832P Gene

Function for RN7SL832P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL832P Gene

Localization for RN7SL832P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL832P Gene

Pathways & Interactions for RN7SL832P Gene

SuperPathways for RN7SL832P Gene

No Data Available

Interacting Proteins for RN7SL832P Gene

Gene Ontology (GO) - Biological Process for RN7SL832P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL832P Gene

Drugs & Compounds for RN7SL832P Gene

No Compound Related Data Available

Transcripts for RN7SL832P Gene

mRNA/cDNA for RN7SL832P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL832P Gene

No ASD Table

Relevant External Links for RN7SL832P Gene

GeneLoc Exon Structure for
RN7SL832P
ECgene alternative splicing isoforms for
RN7SL832P

Expression for RN7SL832P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL832P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL832P Gene:

RN7SL832P
genes like me logo Genes that share expression patterns with RN7SL832P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL832P Gene

Orthologs for RN7SL832P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL832P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 99 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii Metazoa_SRP 35
  • 69 (a)
ManyToMany
Species where no ortholog for RN7SL832P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL832P Gene

ENSEMBL:
Gene Tree for RN7SL832P (if available)
TreeFam:
Gene Tree for RN7SL832P (if available)

Paralogs for RN7SL832P Gene

No data available for Paralogs for RN7SL832P Gene

Variants for RN7SL832P Gene

Sequence variations from dbSNP and Humsavar for RN7SL832P Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000225402 -- 10,689,505(+) CCAAA(A/G)AGGCC intron-variant, upstream-variant-2KB
rs1000648507 -- 10,689,404(+) TGATA(A/G)GGACT intron-variant, upstream-variant-2KB
rs1001334356 -- 10,692,128(+) TAACA(C/T)TTCCT downstream-variant-500B
rs1003484120 -- 10,690,116(+) CTACG(A/G)GCAAG nc-transcript-variant, upstream-variant-2KB
rs1003589225 -- 10,690,455(+) GCTCT(C/T)CCTGC nc-transcript-variant, upstream-variant-2KB

Relevant External Links for RN7SL832P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL832P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL832P Gene

Disorders for RN7SL832P Gene

Relevant External Links for RN7SL832P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RN7SL832P

No disorders were found for RN7SL832P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RN7SL832P Gene

Publications for RN7SL832P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. Human genes and pseudogenes for the 7SL RNA component of signal recognition particle. (PMID: 6084597) Ullu E. … Weiner A.M. (EMBO J. 1984) 3 64

Products for RN7SL832P Gene

Sources for RN7SL832P Gene

Content
Loading form....