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Aliases for RN7SL689P Gene

Subcategory (RNA class) for RN7SL689P Gene

lncRNA

Aliases for RN7SL689P Gene

  • RNA, 7SL, Cytoplasmic 689, Pseudogene 2 3 5

External Ids for RN7SL689P Gene

ORGUL Members for RN7SL689P Gene

Previous GeneCards Identifiers for RN7SL689P Gene

  • GC05M122367

Summaries for RN7SL689P Gene

GeneCards Summary for RN7SL689P Gene

RN7SL689P (RNA, 7SL, Cytoplasmic 689, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SL689P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL689P Gene

Genomics for RN7SL689P Gene

Regulatory Elements for RN7SL689P Gene

Enhancers for RN7SL689P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H122701 1.3 FANTOM5 ENCODE dbSUPER 7.6 +320.5 320510 1 HDGF PKNOX1 BATF RELA POLR2A ATF7 ETV6 RUNX3 IKZF2 CREM SNX2 PRDM6 RN7SL689P ENSG00000260686 SNX24 GC05M122721 ARGFXP1
GH05H122811 0.6 dbSUPER 15.6 +210.2 210177 1 ZNF555 ZSCAN16 ZFP64 ZC3H11A ZNF781 ZNF518A ZNF697 ENSG00000260686 SNX24 RN7SL689P CEP120 SNX2 ZNF474 LOC105379152
GH05H122721 1 Ensembl ENCODE 9.3 +299.8 299846 2 TBL1XR1 MAX EBF1 BATF GATA3 EED ZSCAN5C ETV6 ATF7 RUNX3 LINC02201 RN7SL689P PRDM6 GC05M122721 ARGFXP1
GH05H122843 1.1 ENCODE 7.2 +176.7 176683 4 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 SP3 SP5 REST SNX2 PPIC SNX24 KRT8P33 CEP120 ENSG00000260686 PRDM6 RN7SL689P GC05M122843 GC05P122965
GH05H122750 1.3 FANTOM5 Ensembl ENCODE 5.8 +270.5 270511 2 TBP STAT1 RFX1 CEBPB EBF1 EP300 RFX5 MAFF JUND POLR2A SNX2 SNX24 ENSG00000260686 PRDM6 PPIC LINC02201 RN7SL689P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL689P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL689P Gene

Chromosome:
5
Start:
123,022,487 bp from pter
End:
123,022,783 bp from pter
Size:
297 bases
Orientation:
Minus strand

Genomic View for RN7SL689P Gene

Genes around RN7SL689P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL689P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL689P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL689P Gene

Proteins for RN7SL689P Gene

Post-translational modifications for RN7SL689P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL689P Gene

Domains & Families for RN7SL689P Gene

Gene Families for RN7SL689P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL689P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL689P Gene

Function for RN7SL689P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL689P Gene

Localization for RN7SL689P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL689P Gene

Pathways & Interactions for RN7SL689P Gene

SuperPathways for RN7SL689P Gene

No Data Available

Interacting Proteins for RN7SL689P Gene

Gene Ontology (GO) - Biological Process for RN7SL689P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL689P Gene

Drugs & Compounds for RN7SL689P Gene

No Compound Related Data Available

Transcripts for RN7SL689P Gene

mRNA/cDNA for RN7SL689P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL689P Gene

No ASD Table

Relevant External Links for RN7SL689P Gene

GeneLoc Exon Structure for
RN7SL689P
ECgene alternative splicing isoforms for
RN7SL689P

Expression for RN7SL689P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL689P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL689P Gene:

RN7SL689P
genes like me logo Genes that share expression patterns with RN7SL689P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL689P Gene

Orthologs for RN7SL689P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL689P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 34
  • 98 (a)
OneToOne
Species where no ortholog for RN7SL689P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL689P Gene

ENSEMBL:
Gene Tree for RN7SL689P (if available)
TreeFam:
Gene Tree for RN7SL689P (if available)

Paralogs for RN7SL689P Gene

No data available for Paralogs for RN7SL689P Gene

Variants for RN7SL689P Gene

Relevant External Links for RN7SL689P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL689P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL689P Gene

Disorders for RN7SL689P Gene

No disorders were found for RN7SL689P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL689P Gene

Publications for RN7SL689P Gene

No publications were found for RN7SL689P Gene.

Products for RN7SL689P Gene

Sources for RN7SL689P Gene

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