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Aliases for RN7SL685P Gene

Subcategory (RNA class) for RN7SL685P Gene

lncRNA

Aliases for RN7SL685P Gene

  • RNA, 7SL, Cytoplasmic 685, Pseudogene 2 3 5

External Ids for RN7SL685P Gene

ORGUL Members for RN7SL685P Gene

Previous GeneCards Identifiers for RN7SL685P Gene

  • GC08P101972

Summaries for RN7SL685P Gene

GeneCards Summary for RN7SL685P Gene

RN7SL685P (RNA, 7SL, Cytoplasmic 685, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL685P Gene

Genomics for RN7SL685P Gene

Regulatory Elements for RN7SL685P Gene

Enhancers for RN7SL685P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F101077 1.5 FANTOM5 Ensembl ENCODE 11.7 +121.6 121624 5.0 ATF1 PKNOX1 SIN3A ZNF121 GLIS2 ELK1 FOS SP3 TSHZ1 SMARCB1 POLR2K RN7SL685P YWHAZ ENSG00000271882 GRHL2 FLJ42969 LOC105375674
GH08F101086 1.4 FANTOM5 Ensembl ENCODE 11.9 +131.4 131392 5.8 TAL1 RAD21 NCOR1 TRIM24 FOS FOSL2 ETV6 CREM SMARCE1 RFX1 YWHAZ RN7SL685P FLJ42969 LOC105375674
GH08F100985 1.2 Ensembl ENCODE 12 +28.8 28766 1.9 HDGF PKNOX1 NFRKB GATA2 FOS ETV6 SMARCA5 USF2 ELF1 ZEB2 YWHAZ RN7SL685P GC08M100962 LOC401471
GH08F100993 0.6 ENCODE 11 +36.5 36459 1.1 RFX1 ESRRA IKZF1 ZBTB33 FOXP2 YWHAZ RN7SL685P LOC401471 GC08M100962
GH08F100960 0.5 ENCODE 0.8 +3.0 2965 0.2 POLR2A MAX USF2 POU5F1 GC08M100962 RN7SL685P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL685P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL685P Gene

Chromosome:
8
Start:
100,957,883 bp from pter
End:
100,958,180 bp from pter
Size:
298 bases
Orientation:
Plus strand

Genomic View for RN7SL685P Gene

Genes around RN7SL685P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL685P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL685P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL685P Gene

Proteins for RN7SL685P Gene

Post-translational modifications for RN7SL685P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL685P Gene

Domains & Families for RN7SL685P Gene

Gene Families for RN7SL685P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL685P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL685P Gene

Function for RN7SL685P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL685P Gene

Localization for RN7SL685P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL685P Gene

Pathways & Interactions for RN7SL685P Gene

SuperPathways for RN7SL685P Gene

No Data Available

Interacting Proteins for RN7SL685P Gene

Gene Ontology (GO) - Biological Process for RN7SL685P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL685P Gene

Transcripts for RN7SL685P Gene

mRNA/cDNA for RN7SL685P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL685P Gene

No ASD Table

Relevant External Links for RN7SL685P Gene

GeneLoc Exon Structure for
RN7SL685P
ECgene alternative splicing isoforms for
RN7SL685P

Expression for RN7SL685P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL685P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL685P Gene:

RN7SL685P
genes like me logo Genes that share expression patterns with RN7SL685P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL685P Gene

Orthologs for RN7SL685P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL685P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 95 (a)
OneToOne
Species where no ortholog for RN7SL685P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL685P Gene

ENSEMBL:
Gene Tree for RN7SL685P (if available)
TreeFam:
Gene Tree for RN7SL685P (if available)

Paralogs for RN7SL685P Gene

No data available for Paralogs for RN7SL685P Gene

Variants for RN7SL685P Gene

Relevant External Links for RN7SL685P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL685P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL685P Gene

Disorders for RN7SL685P Gene

No disorders were found for RN7SL685P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL685P Gene

Publications for RN7SL685P Gene

No publications were found for RN7SL685P Gene.

Products for RN7SL685P Gene

Sources for RN7SL685P Gene

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