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Aliases for RN7SL673P Gene

Subcategory (RNA class) for RN7SL673P Gene

SRP

Aliases for RN7SL673P Gene

  • RNA, 7SL, Cytoplasmic 673, Pseudogene 2 3 5

External Ids for RN7SL673P Gene

ORGUL Members for RN7SL673P Gene

Previous GeneCards Identifiers for RN7SL673P Gene

  • GC15P030391
  • GC15P030403
  • GC00U936427
  • GC15P030093

Summaries for RN7SL673P Gene

GeneCards Summary for RN7SL673P Gene

RN7SL673P (RNA, 7SL, Cytoplasmic 673, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL673P Gene - the ORGUL cluster for this gene includes several descriptions:

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL673P Gene

Genomics for RN7SL673P Gene

Regulatory Elements for RN7SL673P Gene


Promoters for RN7SL673P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RN7SL673P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL673P Gene

Chromosome:
15
Start:
30,091,662 bp from pter
End:
30,091,898 bp from pter
Size:
237 bases
Orientation:
Plus strand

Genomic View for RN7SL673P Gene

Genes around RN7SL673P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL673P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL673P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for RN7SL673P Gene

ORGUL Member Location for RN7SL673P gene

No data available for RefSeq DNA sequence for RN7SL673P Gene

Proteins for RN7SL673P Gene

Post-translational modifications for RN7SL673P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL673P Gene

Domains & Families for RN7SL673P Gene

Gene Families for RN7SL673P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL673P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL673P Gene

Function for RN7SL673P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL673P Gene

Localization for RN7SL673P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL673P Gene

Pathways & Interactions for RN7SL673P Gene

SuperPathways for RN7SL673P Gene

No Data Available

Interacting Proteins for RN7SL673P Gene

Gene Ontology (GO) - Biological Process for RN7SL673P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL673P Gene

Drugs & Compounds for RN7SL673P Gene

No Compound Related Data Available

Transcripts for RN7SL673P Gene

mRNA/cDNA for RN7SL673P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL673P Gene

No ASD Table

Relevant External Links for RN7SL673P Gene

GeneLoc Exon Structure for
RN7SL673P
ECgene alternative splicing isoforms for
RN7SL673P

Expression for RN7SL673P Gene

mRNA expression in normal human tissues for RN7SL673P Gene

genes like me logo Genes that share expression patterns with RN7SL673P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RN7SL673P Gene

Orthologs for RN7SL673P Gene

Evolution for RN7SL673P Gene

ENSEMBL:
Gene Tree for RN7SL673P (if available)
TreeFam:
Gene Tree for RN7SL673P (if available)

No data available for Orthologs for RN7SL673P Gene

Paralogs for RN7SL673P Gene

No data available for Paralogs for RN7SL673P Gene

Variants for RN7SL673P Gene

Relevant External Links for RN7SL673P Gene

HapMap Linkage Disequilibrium report
RN7SL673P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL673P Gene

Disorders for RN7SL673P Gene

No disorders were found for RN7SL673P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL673P Gene

Publications for RN7SL673P Gene

No publications were found for RN7SL673P Gene.

Products for RN7SL673P Gene

Sources for RN7SL673P Gene

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