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Aliases for RN7SL592P Gene

Subcategory (RNA class) for RN7SL592P Gene

SRP

Aliases for RN7SL592P Gene

  • RNA, 7SL, Cytoplasmic 592, Pseudogene 2 3 5

External Ids for RN7SL592P Gene

ORGUL Members for RN7SL592P Gene

Summaries for RN7SL592P Gene

GeneCards Summary for RN7SL592P Gene

RN7SL592P (RNA, 7SL, Cytoplasmic 592, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL592P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

Additional gene information for RN7SL592P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL592P Gene

Genomics for RN7SL592P Gene

Regulatory Elements for RN7SL592P Gene

Enhancers for RN7SL592P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H002241 2.1 VISTA FANTOM5 Ensembl ENCODE 0.4 -12.9 -12929 2 PKNOX1 ARID4B SIN3A DMAP1 GLI4 ZNF2 YY1 KLF7 ATF7 RUNX3 RNU2-25P SMARCA2 RN7SL592P LOC105375955
GH09H002229 1 Ensembl ENCODE 0.7 +0.0 4 2 CTCF MAX BMI1 BATF RAD21 EED ATF7 RUNX3 IKZF2 NR2F1 RN7SL592P GC09M002192
GH09H002228 0.5 ENCODE 0.7 +1.1 1121 0 CTCF CEBPG RAD21 MGA RN7SL592P GC09M002192
GH09H002279 1.1 Ensembl ENCODE dbSUPER 0.2 -53.2 -53170 5 RFX1 POLR2A POU5F1 ZNF623 RFX5 ETS1 FOXA1 LOC105375955 RN7SL592P
GH09H002233 0.5 ENCODE 0.4 -5.4 -5447 1 POLR2A REST RCOR1 RN7SL592P LOC105375955
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL592P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL592P Gene

Chromosome:
9
Start:
2,228,961 bp from pter
End:
2,229,241 bp from pter
Size:
281 bases
Orientation:
Minus strand

Genomic View for RN7SL592P Gene

Genes around RN7SL592P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL592P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL592P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL592P Gene

Proteins for RN7SL592P Gene

Post-translational modifications for RN7SL592P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL592P Gene

Domains & Families for RN7SL592P Gene

Gene Families for RN7SL592P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL592P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL592P Gene

Function for RN7SL592P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL592P Gene

Localization for RN7SL592P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL592P Gene

Pathways & Interactions for RN7SL592P Gene

SuperPathways for RN7SL592P Gene

No Data Available

Interacting Proteins for RN7SL592P Gene

Gene Ontology (GO) - Biological Process for RN7SL592P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL592P Gene

Drugs & Compounds for RN7SL592P Gene

No Compound Related Data Available

Transcripts for RN7SL592P Gene

mRNA/cDNA for RN7SL592P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL592P Gene

No ASD Table

Relevant External Links for RN7SL592P Gene

GeneLoc Exon Structure for
RN7SL592P
ECgene alternative splicing isoforms for
RN7SL592P

Expression for RN7SL592P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL592P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL592P Gene:

RN7SL592P
genes like me logo Genes that share expression patterns with RN7SL592P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL592P Gene

Orthologs for RN7SL592P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for RN7SL592P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25735 34
  • 49 (a)
ManyToMany
Gm25072 34
  • 47 (a)
ManyToMany
Gm22906 34
  • 45 (a)
ManyToMany
Gm23563 34
  • 45 (a)
ManyToMany
Gm22662 34
  • 44 (a)
ManyToMany
Gm24576 34
  • 44 (a)
ManyToMany
Gm25304 34
  • 44 (a)
ManyToMany
Gm25467 34
  • 44 (a)
ManyToMany
Gm25574 34
  • 44 (a)
ManyToMany
Metazoa_SRP 34 34
  • 44 (a)
ManyToMany
Gm22993 34
  • 43 (a)
ManyToMany
Gm26112 34
  • 42 (a)
ManyToMany
Gm24809 34
  • 41 (a)
ManyToMany
Gm22642 34
  • 29 (a)
ManyToMany
Gm25734 34
  • 25 (a)
ManyToMany
Species where no ortholog for RN7SL592P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL592P Gene

ENSEMBL:
Gene Tree for RN7SL592P (if available)
TreeFam:
Gene Tree for RN7SL592P (if available)

Paralogs for RN7SL592P Gene

No data available for Paralogs for RN7SL592P Gene

Variants for RN7SL592P Gene

Relevant External Links for RN7SL592P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL592P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL592P Gene

Disorders for RN7SL592P Gene

No disorders were found for RN7SL592P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL592P Gene

Publications for RN7SL592P Gene

No publications were found for RN7SL592P Gene.

Products for RN7SL592P Gene

Sources for RN7SL592P Gene

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