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RN7SL566P Gene(Pseudogene)

RNA, 7SL, Cytoplasmic 566, Pseudogene

GCID:
GC19P039370
GIFtS:
12
Genes Participants
UDN Logo

Aliases for RN7SL566P Gene

Subcategory (RNA class) for RN7SL566P Gene

lncRNA

Aliases for RN7SL566P Gene

  • RNA, 7SL, Cytoplasmic 566, Pseudogene 2 3 5

External Ids for RN7SL566P Gene

ORGUL Members for RN7SL566P Gene

Previous GeneCards Identifiers for RN7SL566P Gene

  • GC19P039865

Summaries for RN7SL566P Gene

GeneCards Summary for RN7SL566P Gene

RN7SL566P (RNA, 7SL, Cytoplasmic 566, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SL566P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL566P Gene

Genomics for RN7SL566P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RN7SL566P Gene

Promoters and enhancers for RN7SL566P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I039397 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 83.8 +37.9 37922 20 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 ZFP36 PLEKHG2 HNRNPL ZNF780B FBL ZNF780A SUPT5H AKT2 RN7SL566P RPS16
GH19I039368 Enhancer 0.4 dbSUPER 550.8 +0.6 602 3.3 ZNF121 ESRRA KLF1 RN7SL566P PAF1 MED29 RPS16 SUPT5H TIMM50 EID2B SAMD4B ENSG00000205041 GC19P039385
GH19I038647 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 47.8 -709.4 -709360 25.6 ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC ZC3H11A ACTN4 HNRNPL ZFP30 ZNF607 ZNF781 ZNF573 SUPT5H ENSG00000267152 PAK4 RN7SL566P
GH19I039427 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 39 +63.0 62993 9.7 MLX ZFP64 DMAP1 IRF4 YY1 E2F8 ZNF416 ZNF143 SP3 NFYC RPS16 HNRNPL FBL ZNF780B AKT2 PLEKHG2 RN7SL566P SUPT5H ENSG00000269688 EID2B
GH19I039340 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 45.8 -26.9 -26917 3.2 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A SSRP1 ZNF610 SAMD4B ENSG00000269246 GMFG GC19P039341 HNRNPL FBL PSMC4 AKT2 RN7SL566P ENSG00000269688
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SL566P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL566P Gene

Genomic Locations for RN7SL566P Gene
chr19:39,369,153-39,369,448
(GRCh38/hg38)
Size:
296 bases
Orientation:
Plus strand
chr19:39,859,793-39,860,086
(GRCh37/hg19)

Genomic View for RN7SL566P Gene

Genes around RN7SL566P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL566P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL566P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RN7SL566P Gene

Proteins for RN7SL566P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RN7SL566P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL566P Gene

Domains & Families for RN7SL566P Gene

Gene Families for RN7SL566P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL566P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL566P Gene

Function for RN7SL566P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RN7SL566P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL566P Gene

Localization for RN7SL566P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL566P Gene

Pathways & Interactions for RN7SL566P Gene

SuperPathways for RN7SL566P Gene

PathCards logo More details on SuperPathways for RN7SL566P
No Data Available

Interacting Proteins for RN7SL566P Gene

Gene Ontology (GO) - Biological Process for RN7SL566P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL566P Gene

Drugs & Compounds for RN7SL566P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RN7SL566P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RN7SL566P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL566P Gene

No ASD Table

Relevant External Links for RN7SL566P Gene

GeneLoc Exon Structure for
RN7SL566P
ECgene alternative splicing isoforms for
RN7SL566P

Expression for RN7SL566P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL566P Gene

mRNA expression in normal human tissues for RN7SL566P Gene
mRNA expression by GTEx for RN7SL566P Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL566P Gene

This gene is overexpressed in Whole Blood (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL566P Gene:

RN7SL566P
genes like me logo Genes that share expression patterns with RN7SL566P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL566P Gene

Orthologs for RN7SL566P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL566P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia Metazoa_SRP 34
  • 99 (a)
 OneToOne
Species where no ortholog for RN7SL566P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL566P Gene

ENSEMBL:
Gene Tree for RN7SL566P (if available)
TreeFam:
Gene Tree for RN7SL566P (if available)

Paralogs for RN7SL566P Gene

No data available for Paralogs for RN7SL566P Gene

Variants for RN7SL566P Gene

Additional Variant Information for RN7SL566P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL566P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL566P Gene

Disorders for RN7SL566P Gene

No disorders were found for RN7SL566P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL566P Gene

Publications for RN7SL566P Gene

No publications were found for RN7SL566P Gene.

Products for RN7SL566P Gene

Sources for RN7SL566P Gene

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