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Aliases for RN7SL535P Gene

Subcategory (RNA class) for RN7SL535P Gene

lncRNA

Aliases for RN7SL535P Gene

  • RNA, 7SL, Cytoplasmic 535, Pseudogene 2 3 5

External Ids for RN7SL535P Gene

ORGUL Members for RN7SL535P Gene

Previous GeneCards Identifiers for RN7SL535P Gene

  • GC07P142992
  • GC07P143304
  • GC07P143309
  • GC07P143323
  • GC07P143327
  • GC07P143401
  • GC07P143548
  • GC07P143686

Summaries for RN7SL535P Gene

GeneCards Summary for RN7SL535P Gene

RN7SL535P (RNA, 7SL, Cytoplasmic 535, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SL535P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL535P Gene

Genomics for RN7SL535P Gene

GeneHancer (GH) Regulatory Elements for RN7SL535P Gene

Promoters and enhancers for RN7SL535P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I143290 Enhancer 0.4 dbSUPER 550.8 +0.5 476 1.1 MITF BCLAF1 RN7SL535P GSTK1 CASP2 RN7SL481P
GH07I143292 Enhancer 0.2 dbSUPER 550.8 +1.7 1744 0.5 RN7SL535P GSTK1 LOC100507507 ZYX CLCN1 HINT1P1 FAM131B CASP2 RN7SL481P
GH07I143378 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.3 +95.6 95579 15.9 HDGF PKNOX1 FOXA2 SMAD1 ARNT MLX ARID4B SIN3A YBX1 ZNF2 ZYX CASP2 LOC154761 OR2A1 RN7SL535P EPHA1-AS1 EPHA1 TCAF2 HINT1P1 CLCN1
GH07I143282 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 12.7 -4.1 -4068 7.1 HDGF FOXA2 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CASP2 GC07M143288 PIR32183 LOC105375545 TMEM139 LOC154761 RN7SL535P ZYX TRPV6
GH07I143244 Enhancer 0.9 FANTOM5 Ensembl ENCODE 24.2 -45.3 -45319 1.3 MITF MCM7 PRDM6 ZNF266 FOSL2 GSTK1 CASP2 RN7SL535P FAM131B TMEM139 LOC105375545 LOC154761 LOC100507507 ZYX TCAF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SL535P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SL535P Gene

Genomic Locations for RN7SL535P Gene
chr7:143,290,615-143,290,910
(GRCh38/hg38)
Size:
296 bases
Orientation:
Plus strand
chr7:142,987,708-142,988,004
(GRCh37/hg19)

Genomic View for RN7SL535P Gene

Genes around RN7SL535P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL535P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL535P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL535P Gene

Proteins for RN7SL535P Gene

Post-translational modifications for RN7SL535P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL535P Gene

Domains & Families for RN7SL535P Gene

Gene Families for RN7SL535P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL535P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL535P Gene

Function for RN7SL535P Gene

Phenotypes From GWAS Catalog for RN7SL535P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL535P Gene

Localization for RN7SL535P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL535P Gene

Pathways & Interactions for RN7SL535P Gene

SuperPathways for RN7SL535P Gene

No Data Available

Interacting Proteins for RN7SL535P Gene

Gene Ontology (GO) - Biological Process for RN7SL535P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL535P Gene

Drugs & Compounds for RN7SL535P Gene

No Compound Related Data Available

Transcripts for RN7SL535P Gene

mRNA/cDNA for RN7SL535P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL535P Gene

No ASD Table

Relevant External Links for RN7SL535P Gene

GeneLoc Exon Structure for
RN7SL535P
ECgene alternative splicing isoforms for
RN7SL535P

Expression for RN7SL535P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL535P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL535P Gene:

RN7SL535P
genes like me logo Genes that share expression patterns with RN7SL535P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL535P Gene

Orthologs for RN7SL535P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL535P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 34
  • 99 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii Metazoa_SRP 34
  • 70 (a)
ManyToMany
Species where no ortholog for RN7SL535P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL535P Gene

ENSEMBL:
Gene Tree for RN7SL535P (if available)
TreeFam:
Gene Tree for RN7SL535P (if available)

Paralogs for RN7SL535P Gene

No data available for Paralogs for RN7SL535P Gene

Variants for RN7SL535P Gene

Additional Variant Information for RN7SL535P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL535P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL535P Gene

Disorders for RN7SL535P Gene

No disorders were found for RN7SL535P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL535P Gene

Publications for RN7SL535P Gene

No publications were found for RN7SL535P Gene.

Products for RN7SL535P Gene

Sources for RN7SL535P Gene

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