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Aliases for RN7SL535P Gene

Subcategory (RNA class) for RN7SL535P Gene

lncRNA

Aliases for RN7SL535P Gene

  • RNA, 7SL, Cytoplasmic 535, Pseudogene 2 3 5

External Ids for RN7SL535P Gene

ORGUL Members for RN7SL535P Gene

Previous GeneCards Identifiers for RN7SL535P Gene

  • GC07P142992
  • GC07P143304
  • GC07P143309
  • GC07P143323
  • GC07P143327

Summaries for RN7SL535P Gene

GeneCards Summary for RN7SL535P Gene

RN7SL535P (RNA, 7SL, Cytoplasmic 535, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL535P Gene

Genomics for RN7SL535P Gene

Regulatory Elements for RN7SL535P Gene

Enhancers for RN7SL535P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F143258 1.5 FANTOM5 Ensembl ENCODE 13.3 -31.3 -31347 2.2 YY1 ZNF766 GATA2 CBX5 FOS SP3 JUNB NCOA1 SMARCA4 PBX2 TMEM139 LOC105375545 CASP2 RN7SL535P EPHA1 EPHA1-AS1 FAM131B HINT1P1 CLCN1 ZYX
GH07F143345 1.2 Ensembl ENCODE 11.1 +55.2 55170 1.3 ATF1 GLI4 ZNF2 ZNF48 GLIS2 KLF7 KDM4B JUNB NFIL3 ZNF610 CLCN1 HINT1P1 ZYX LOC100507507 RN7SL535P CASP2 LOC105375545 TMEM139 EPHA1 EPHA1-AS1
GH07F143248 1.1 Ensembl ENCODE 11.6 -40.3 -40315 4.2 ELF3 CBX3 MLX ARID4B RAD21 RARA YY1 MIXL1 THAP11 NR2F2 CASP2 TMEM139 LOC105375545 RN7SL535P FAM131B EPHB6 GSTK1
GH07F143244 1.1 FANTOM5 Ensembl ENCODE 11.6 -45.5 -45464 3.7 MCM7 PKNOX1 MCM3 ZNF266 KDM1A MYC FAM131B TMEM139 LOC105375545 CASP2 RN7SL535P LOC100507507 ZYX OR9A2 TAS2R39 TRPV6
GH07F143310 1 Ensembl ENCODE 11.9 +20.1 20073 0.6 CTCF ATF1 CBX3 RAD21 ZNF335 ZNF143 SMC3 ZMIZ1 ZSCAN29 CREM CASP2 LOC105375545 RN7SL535P TMEM139 GSTK1 FAM131B ZYX LOC100507507 EPHA1 EPHA1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL535P on UCSC Golden Path with GeneCards custom track

Promoters for RN7SL535P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000314289 -1815 2001 HDGF PKNOX1 ARNT SIN3A DMAP1 ZNF2 YY1 ZNF766 CBX5 KLF13

Genomic Location for RN7SL535P Gene

Chromosome:
7
Start:
143,290,615 bp from pter
End:
143,290,910 bp from pter
Size:
296 bases
Orientation:
Plus strand

Genomic View for RN7SL535P Gene

Genes around RN7SL535P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL535P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL535P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL535P Gene

Proteins for RN7SL535P Gene

Post-translational modifications for RN7SL535P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL535P Gene

Domains & Families for RN7SL535P Gene

Gene Families for RN7SL535P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL535P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL535P Gene

Function for RN7SL535P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL535P Gene

Localization for RN7SL535P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL535P Gene

Pathways & Interactions for RN7SL535P Gene

SuperPathways for RN7SL535P Gene

No Data Available

Interacting Proteins for RN7SL535P Gene

Gene Ontology (GO) - Biological Process for RN7SL535P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL535P Gene

Transcripts for RN7SL535P Gene

mRNA/cDNA for RN7SL535P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL535P Gene

No ASD Table

Relevant External Links for RN7SL535P Gene

GeneLoc Exon Structure for
RN7SL535P
ECgene alternative splicing isoforms for
RN7SL535P

Expression for RN7SL535P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL535P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL535P Gene:

RN7SL535P
genes like me logo Genes that share expression patterns with RN7SL535P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL535P Gene

Orthologs for RN7SL535P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL535P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 99 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii Metazoa_SRP 35
  • 70 (a)
ManyToMany
Species where no ortholog for RN7SL535P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL535P Gene

ENSEMBL:
Gene Tree for RN7SL535P (if available)
TreeFam:
Gene Tree for RN7SL535P (if available)

Paralogs for RN7SL535P Gene

No data available for Paralogs for RN7SL535P Gene

Variants for RN7SL535P Gene

Relevant External Links for RN7SL535P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL535P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL535P Gene

Disorders for RN7SL535P Gene

No disorders were found for RN7SL535P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL535P Gene

Publications for RN7SL535P Gene

No publications were found for RN7SL535P Gene.

Products for RN7SL535P Gene

Sources for RN7SL535P Gene

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