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Aliases for RN7SL49P Gene

Subcategory (RNA class) for RN7SL49P Gene

SRP

Aliases for RN7SL49P Gene

  • RNA, 7SL, Cytoplasmic 49, Pseudogene 2 3 5

External Ids for RN7SL49P Gene

ORGUL Members for RN7SL49P Gene

Previous GeneCards Identifiers for RN7SL49P Gene

  • GC13P045581

Summaries for RN7SL49P Gene

GeneCards Summary for RN7SL49P Gene

RN7SL49P (RNA, 7SL, Cytoplasmic 49, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL49P Gene

Genomics for RN7SL49P Gene

Regulatory Elements for RN7SL49P Gene

Enhancers for RN7SL49P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F044710 1.2 FANTOM5 Ensembl ENCODE 25.8 -288.9 -288893 6.2 TBP ZFP64 SIN3A RAD21 ZNF354C RCOR1 ETV6 FOS ZNF202 ZNF680 RN7SL49P RCN1P2 ERICH6B SMARCE1P5 TSC22D1 CCDC122 KCTD4 GC13P044709 LOC105370185
GH13F044248 0.5 Ensembl ENCODE 25.5 -752.6 -752578 1.5 ZNF493 ZFP64 FEZF1 RAD21 ZNF366 ZNF354C SCRT2 ZNF202 ZNF680 ZNF654 RN7SL49P SMARCE1P5 SERP2 CCDC122 ENSG00000230731 GC13M044260
GH13F044141 0.2 ENCODE 13.8 -859.7 -859655 3.6 PKNOX1 ZFP64 SIN3A ARID4B DMAP1 YY1 ZNF143 FOS SP3 SP5 SMIM2-AS1 RN7SL49P SMARCE1P5 CCDC122 LINC00390 GC13P044121
GH13F044140 0.9 Ensembl ENCODE 13.8 -861.8 -861750 0.4 ZFP64 ZNF140 ZNF266 RAD21 ZIC2 ZNF664 GATA3 ZNF354C ZNF547 FOS RN7SL49P SMARCE1P5 SMIM2 CCDC122 LINC00390 GC13P044121
GH13F045463 0.9 ENCODE 13.8 +463.0 462970 2.9 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 KLF13 SP3 RN7SL49P COG3 TPT1-AS1 GC13M045553
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SL49P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL49P Gene

Chromosome:
13
Start:
45,002,150 bp from pter
End:
45,002,447 bp from pter
Size:
298 bases
Orientation:
Plus strand

Genomic View for RN7SL49P Gene

Genes around RN7SL49P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL49P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL49P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL49P Gene

Proteins for RN7SL49P Gene

Post-translational modifications for RN7SL49P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL49P Gene

Domains & Families for RN7SL49P Gene

Gene Families for RN7SL49P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL49P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL49P Gene

Function for RN7SL49P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL49P Gene

Localization for RN7SL49P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL49P Gene

Pathways & Interactions for RN7SL49P Gene

SuperPathways for RN7SL49P Gene

No Data Available

Interacting Proteins for RN7SL49P Gene

Gene Ontology (GO) - Biological Process for RN7SL49P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL49P Gene

Transcripts for RN7SL49P Gene

mRNA/cDNA for RN7SL49P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL49P Gene

No ASD Table

Relevant External Links for RN7SL49P Gene

GeneLoc Exon Structure for
RN7SL49P
ECgene alternative splicing isoforms for
RN7SL49P

Expression for RN7SL49P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL49P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL49P Gene:

RN7SL49P
genes like me logo Genes that share expression patterns with RN7SL49P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL49P Gene

Orthologs for RN7SL49P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL49P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 98 (a)
OneToOne
Species where no ortholog for RN7SL49P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL49P Gene

ENSEMBL:
Gene Tree for RN7SL49P (if available)
TreeFam:
Gene Tree for RN7SL49P (if available)

Paralogs for RN7SL49P Gene

No data available for Paralogs for RN7SL49P Gene

Variants for RN7SL49P Gene

Relevant External Links for RN7SL49P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL49P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL49P Gene

Disorders for RN7SL49P Gene

No disorders were found for RN7SL49P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL49P Gene

Publications for RN7SL49P Gene

No publications were found for RN7SL49P Gene.

Products for RN7SL49P Gene

Sources for RN7SL49P Gene

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