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Aliases for RN7SL471P Gene

Subcategory (RNA class) for RN7SL471P Gene

SRP

Aliases for RN7SL471P Gene

  • RNA, 7SL, Cytoplasmic 471, Pseudogene 2 3 5
  • RNA, 7SL, Cytoplasmic 257, Pseudogene 2 3
  • RN7SL257P 3

External Ids for RN7SL471P Gene

ORGUL Members for RN7SL471P Gene

Previous HGNC Symbols for RN7SL471P Gene

  • RN7SL257P

Previous GeneCards Identifiers for RN7SL471P Gene

  • GC06P028952
  • GC06P028970

Summaries for RN7SL471P Gene

GeneCards Summary for RN7SL471P Gene

RN7SL471P (RNA, 7SL, Cytoplasmic 471, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL471P Gene

Genomics for RN7SL471P Gene

Regulatory Elements for RN7SL471P Gene

Enhancers for RN7SL471P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028942 1.4 ENCODE dbSUPER 5.6 -33.4 -33358 2.3 MLX CREB3L1 ZFP64 FEZF1 DMAP1 ZNF143 SP3 NFYC TBX21 MEF2D TRIM27 ZKSCAN3 ZKSCAN8 ZSCAN26 ZSCAN23 ZKSCAN4 ZSCAN9 ZNF311 HCG4B RN7SL471P
GH06G028795 1.4 Ensembl ENCODE 5.3 -181.5 -181475 0.8 PKNOX1 MLX CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF548 ZKSCAN8 ZKSCAN3 ZKSCAN4 GABBR1 ZSCAN9 HLA-F-AS1 PGBD1 ZFP57 ZNF603P RN7SL471P
GH06G028727 1.2 ENCODE dbSUPER 5.9 -251.3 -251337 0.2 CREB3L1 ARNT ZNF2 GTF3C2 ZNF766 ZNF592 MYNN NBN HMBOX1 KDM1A ZKSCAN3 ZKSCAN4 ZKSCAN8 TRIM27 RN7SL471P TRF-GAA11-1 TRT-AGT3-1
GH06G028875 0.5 ENCODE 5.7 -101.8 -101792 0.6 CTCF POLR2H ZBTB33 TRIM27 RN7SL471P GC06P028888 LINC01623
GH06G028977 1.7 Ensembl ENCODE dbSUPER 0.7 +2.9 2900 6.5 CREB3L1 MLX DMAP1 FEZF1 YBX1 YY1 ZNF143 SP3 NFYC MEF2D ZKSCAN3 TRIM27 ZKSCAN4 ZKSCAN8 ZNF311 HLA-K ZFP57 HCG4B ZNF602P ZNF603P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL471P on UCSC Golden Path with GeneCards custom track

Promoters for RN7SL471P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195297 25 601 JUN ZNF175 BACH1 FOSL1 ZNF766 ZNF366 NFE2 TRIM24 FOS ZNF639

Genomic Location for RN7SL471P Gene

Chromosome:
6
Start:
28,977,475 bp from pter
End:
28,977,773 bp from pter
Size:
299 bases
Orientation:
Plus strand

Genomic View for RN7SL471P Gene

Genes around RN7SL471P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL471P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL471P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for RN7SL471P Gene

Post-translational modifications for RN7SL471P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL471P Gene

Domains & Families for RN7SL471P Gene

Gene Families for RN7SL471P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL471P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL471P Gene

Function for RN7SL471P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL471P Gene

Localization for RN7SL471P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL471P Gene

Pathways & Interactions for RN7SL471P Gene

SuperPathways for RN7SL471P Gene

No Data Available

Interacting Proteins for RN7SL471P Gene

Gene Ontology (GO) - Biological Process for RN7SL471P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL471P Gene

Drugs & Compounds for RN7SL471P Gene

No Compound Related Data Available

Transcripts for RN7SL471P Gene

mRNA/cDNA for RN7SL471P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL471P Gene

No ASD Table

Relevant External Links for RN7SL471P Gene

GeneLoc Exon Structure for
RN7SL471P
ECgene alternative splicing isoforms for
RN7SL471P

Expression for RN7SL471P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL471P Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL471P Gene

This gene is overexpressed in Brain - Substantia nigra (x11.5), Brain - Hypothalamus (x6.9), Brain - Hippocampus (x5.9), and Brain - Nucleus accumbens (basal ganglia) (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL471P Gene:

RN7SL471P
genes like me logo Genes that share expression patterns with RN7SL471P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL471P Gene

Orthologs for RN7SL471P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL471P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Metazoa_SRP 35
  • 91 (a)
OneToOne
chicken
(Gallus gallus)
Aves Metazoa_SRP 35 35 35 35
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Metazoa_SRP 35 35 35
  • 61 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii Metazoa_SRP 35
  • 70 (a)
ManyToMany
Species where no ortholog for RN7SL471P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL471P Gene

ENSEMBL:
Gene Tree for RN7SL471P (if available)
TreeFam:
Gene Tree for RN7SL471P (if available)

Paralogs for RN7SL471P Gene

No data available for Paralogs for RN7SL471P Gene

Variants for RN7SL471P Gene

Relevant External Links for RN7SL471P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL471P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL471P Gene

Disorders for RN7SL471P Gene

No disorders were found for RN7SL471P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL471P Gene

Publications for RN7SL471P Gene

No publications were found for RN7SL471P Gene.

Products for RN7SL471P Gene

Sources for RN7SL471P Gene

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