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Aliases for RN7SL471P Gene

Subcategory (RNA class) for RN7SL471P Gene

SRP

Aliases for RN7SL471P Gene

  • RNA, 7SL, Cytoplasmic 471, Pseudogene 2 3 5
  • RNA, 7SL, Cytoplasmic 257, Pseudogene 2 3
  • RN7SL257P 3

External Ids for RN7SL471P Gene

ORGUL Members for RN7SL471P Gene

Previous HGNC Symbols for RN7SL471P Gene

  • RN7SL257P

Previous GeneCards Identifiers for RN7SL471P Gene

  • GC06P028952
  • GC06P028970

Summaries for RN7SL471P Gene

GeneCards Summary for RN7SL471P Gene

RN7SL471P (RNA, 7SL, Cytoplasmic 471, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

Additional gene information for RN7SL471P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL471P Gene

Genomics for RN7SL471P Gene

Regulatory Elements for RN7SL471P Gene

Enhancers for RN7SL471P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H028942 1.4 ENCODE dbSUPER 5.6 -33.4 -33358 2.3 HDGF MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF766 ZKSCAN8 TRIM27 ZSCAN12 ZKSCAN3 ZSCAN23 ZSCAN26 ZKSCAN4 ZSCAN9 ZNF311 SUMO2P1
GH06H028795 1.4 Ensembl ENCODE 5.3 -181.5 -181475 0.8 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF766 SP3 ZHX2 ZKSCAN8 ZSCAN12 ZKSCAN3 GABBR1 ZSCAN23 PGBD1 ZKSCAN4 ZFP57 ZSCAN9 SUMO2P1
GH06H028727 1.2 ENCODE dbSUPER 5.9 -251.3 -251337 0.2 ARNT ZNF2 GTF3C2 ZNF766 ATF7 ZNF592 ZNF184 MYNN NBN HMBOX1 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN23 ZKSCAN4 TRIM27 SUMO2P1 RN7SL471P TRT-AGT3-1 TRF-GAA11-1
GH06H028875 0.4 ENCODE 5.7 -101.8 -101792 0.6 ZBTB33 TRIM27 RN7SL471P GC06P028888 LINC01623
GH06H028977 1.7 Ensembl ENCODE dbSUPER 0.7 +2.9 2900 6.5 MLX DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 RCOR2 NBN ZKSCAN3 ZKSCAN4 ZKSCAN8 ZSCAN12 TRIM27 ZNF311 HLA-K ZSCAN9 ZSCAN23 ZFP57
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL471P on UCSC Golden Path with GeneCards custom track

Promoters for RN7SL471P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195297 25 601 JUN ZNF175 FOSL1 ZNF766 ZNF366 POLR2A FOS NFE2 TRIM24 ZNF639

Genomic Locations for RN7SL471P Gene

Genomic Locations for RN7SL471P Gene
chr6:28,977,475-28,977,773
(GRCh38/hg38)
Size:
299 bases
Orientation:
Plus strand
chr6:28,945,252-28,945,547
(GRCh37/hg19)

Genomic View for RN7SL471P Gene

Genes around RN7SL471P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL471P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL471P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for RN7SL471P Gene

Post-translational modifications for RN7SL471P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL471P Gene

Domains & Families for RN7SL471P Gene

Gene Families for RN7SL471P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL471P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL471P Gene

Function for RN7SL471P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL471P Gene

Localization for RN7SL471P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SL471P Gene

Pathways & Interactions for RN7SL471P Gene

SuperPathways for RN7SL471P Gene

No Data Available

Interacting Proteins for RN7SL471P Gene

Gene Ontology (GO) - Biological Process for RN7SL471P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL471P Gene

Drugs & Compounds for RN7SL471P Gene

No Compound Related Data Available

Transcripts for RN7SL471P Gene

mRNA/cDNA for RN7SL471P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL471P Gene

No ASD Table

Relevant External Links for RN7SL471P Gene

GeneLoc Exon Structure for
RN7SL471P
ECgene alternative splicing isoforms for
RN7SL471P

Expression for RN7SL471P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SL471P Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL471P Gene

This gene is overexpressed in Brain - Substantia nigra (x11.5), Brain - Hypothalamus (x6.9), Brain - Hippocampus (x5.9), and Brain - Nucleus accumbens (basal ganglia) (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL471P Gene:

RN7SL471P
genes like me logo Genes that share expression patterns with RN7SL471P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SL471P Gene

Orthologs for RN7SL471P Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SL471P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia Metazoa_SRP 34
  • 91 (a)
OneToOne
chicken
(Gallus gallus)
Aves Metazoa_SRP 34 34 34 34
  • 70 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia Metazoa_SRP 34 34 34
  • 61 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii Metazoa_SRP 34
  • 70 (a)
ManyToMany
Species where no ortholog for RN7SL471P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SL471P Gene

ENSEMBL:
Gene Tree for RN7SL471P (if available)
TreeFam:
Gene Tree for RN7SL471P (if available)

Paralogs for RN7SL471P Gene

No data available for Paralogs for RN7SL471P Gene

Variants for RN7SL471P Gene

Relevant External Links for RN7SL471P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL471P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL471P Gene

Disorders for RN7SL471P Gene

No disorders were found for RN7SL471P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL471P Gene

Publications for RN7SL471P Gene

No publications were found for RN7SL471P Gene.

Products for RN7SL471P Gene

Sources for RN7SL471P Gene

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