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Aliases for RN7SL470P Gene

Subcategory (RNA class) for RN7SL470P Gene

SRP

Aliases for RN7SL470P Gene

  • RNA, 7SL, Cytoplasmic 470, Pseudogene 2 3 5

External Ids for RN7SL470P Gene

ORGUL Members for RN7SL470P Gene

Previous GeneCards Identifiers for RN7SL470P Gene

  • GC02M070304

Summaries for RN7SL470P Gene

GeneCards Summary for RN7SL470P Gene

RN7SL470P (RNA, 7SL, Cytoplasmic 470, Pseudogene) is a Pseudogene, and is affiliated with the SRP RNA class.

fRNAdb sequence ontologies for RN7SL470P Gene

  • Metazoan signal recognition particle RNA: The signal recognition particle (SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. Eukaryotic and archaeal 7S RNAs have very similar secondary structures, as represented by this family. Eight helical elements fold into the Alu and S domains, separated by a long linker region [1,2]. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP [1]. The universally conserved helix which interacts with the SRP54 M domain mediates signal sequence recognition [2,3]. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilises helix 8 for SRP54 binding [1]. The Signal Recognition Particle Database (SRPDB) [4] provides compilations of SRP components, with phylogenetic data and structural illustrations. Many sequences below the threshold for this family are clearly closely related, but are most likely to be SRP RNA derived pseudogenes. The human genome in particular is known to contain a large amount of SRP RNA related sequence, including Alu repeats. While the threshold of this family is set high so as to minimise the number of hits to such regions, it is likely that some remain.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SL470P Gene

Genomics for RN7SL470P Gene

Regulatory Elements for RN7SL470P Gene

Enhancers for RN7SL470P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F070078 0.7 ENCODE 0.8 -3.7 -3657 1.7 LEF1 PKNOX1 TAL1 NCOR1 GATA2 TRIM24 PRDM10 SMARCE1 ZNF362 MTA2 PCYOX1 RN7SL470P PCBP1
GH02F070067 1.6 FANTOM5 Ensembl ENCODE 0.4 +5.7 5718 4.8 HDGF PKNOX1 ATF1 WRNIP1 SIN3A ARID4B YY1 ZNF143 ZHX2 JUNB MXD1 ASPRV1 PCBP1-AS1 C2orf42 SNRNP27 PCBP1 GMCL1 RN7SL470P PIR47967
GH02F070080 0.2 ENCODE 0.4 -11.1 -11120 11.6 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF263 SP3 TBX21 MEF2D PCBP1-AS1 C2orf42 GMCL1 PCBP1 MXD1 SNRNP27 TEX261 NAGK PCYOX1 RN7SL470P
GH02F070041 0.9 FANTOM5 Ensembl ENCODE 0.3 +30.4 30351 7.4 PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF121 FOS MXD1 PCBP1-AS1 ASPRV1 PCBP1 PCYOX1 GMCL1 C2orf42 RN7SL470P PIR47967
GH02F070039 0.8 FANTOM5 0.3 +35.8 35800 0.3 CTCF KDM1A MXD1 PCBP1-AS1 ASPRV1 PCBP1 GMCL1 RN7SL470P PIR47967
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SL470P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL470P Gene

Chromosome:
2
Start:
70,075,014 bp from pter
End:
70,075,272 bp from pter
Size:
259 bases
Orientation:
Minus strand

Genomic View for RN7SL470P Gene

Genes around RN7SL470P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL470P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL470P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RN7SL470P Gene

Proteins for RN7SL470P Gene

Post-translational modifications for RN7SL470P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL470P Gene

Domains & Families for RN7SL470P Gene

Gene Families for RN7SL470P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL470P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL470P Gene

Function for RN7SL470P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL470P Gene

Localization for RN7SL470P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL470P Gene

Pathways & Interactions for RN7SL470P Gene

SuperPathways for RN7SL470P Gene

No Data Available

Interacting Proteins for RN7SL470P Gene

Gene Ontology (GO) - Biological Process for RN7SL470P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL470P Gene

Transcripts for RN7SL470P Gene

mRNA/cDNA for RN7SL470P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL470P Gene

No ASD Table

Relevant External Links for RN7SL470P Gene

GeneLoc Exon Structure for
RN7SL470P
ECgene alternative splicing isoforms for
RN7SL470P

Expression for RN7SL470P Gene

mRNA expression in normal human tissues for RN7SL470P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL470P Gene:

RN7SL470P
genes like me logo Genes that share expression patterns with RN7SL470P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL470P Gene

Orthologs for RN7SL470P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL470P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 69 (a)
OneToOne
Species where no ortholog for RN7SL470P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL470P Gene

ENSEMBL:
Gene Tree for RN7SL470P (if available)
TreeFam:
Gene Tree for RN7SL470P (if available)

Paralogs for RN7SL470P Gene

No data available for Paralogs for RN7SL470P Gene

Variants for RN7SL470P Gene

Relevant External Links for RN7SL470P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL470P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL470P Gene

Disorders for RN7SL470P Gene

No disorders were found for RN7SL470P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL470P Gene

Publications for RN7SL470P Gene

No publications were found for RN7SL470P Gene.

Products for RN7SL470P Gene

Sources for RN7SL470P Gene

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