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Aliases for RN7SL354P Gene

Subcategory (RNA class) for RN7SL354P Gene

lncRNA

Aliases for RN7SL354P Gene

  • RNA, 7SL, Cytoplasmic 354, Pseudogene 2 3 5

External Ids for RN7SL354P Gene

ORGUL Members for RN7SL354P Gene

Previous GeneCards Identifiers for RN7SL354P Gene

  • GC15P050983

Summaries for RN7SL354P Gene

GeneCards Summary for RN7SL354P Gene

RN7SL354P (RNA, 7SL, Cytoplasmic 354, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL354P Gene

Genomics for RN7SL354P Gene

Regulatory Elements for RN7SL354P Gene

Enhancers for RN7SL354P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F050711 1 ENCODE 12.8 +23.2 23180 1.1 HDGF HDAC1 ATF1 CBX3 PKNOX1 TBL1XR1 ARNT ZBTB40 CHAMP1 GATA2 TRPM7 RN7SL354P AP4E1 GC15P050730
GH15F050718 0.6 ENCODE 12.6 +30.1 30084 1.6 PKNOX1 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 MXD4 MIER2 TBX21 TRPM7 SPPL2A RN7SL354P RPL32P30 GC15P050730
GH15F050746 0.2 ENCODE 11.6 +58.4 58423 1.5 CTCF JUND SIN3A MGA RN7SL354P TRPM7 RPL32P30 SPPL2A ENSG00000259773
GH15F050876 1.4 FANTOM5 Ensembl ENCODE 11.6 +188.2 188201 1.4 TBP CBX3 ARID4B SIN3A BRCA1 RAD21 RFX5 CHAMP1 YY1 ELK1 SPPL2A TRPM7 AP4E1 RN7SL354P USP8 GC15P050883 PIR42507
GH15F050873 0.8 Ensembl 11.6 +185.2 185201 1.0 CTCF PKNOX1 ZNF384 EBF1 RAD21 ZNF512 CEBPA SMC3 AP4E1 RN7SL354P TRPM7 USP50 SPPL2A ENSG00000259306 GC15P050883 PIR42507
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SL354P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL354P Gene

Chromosome:
15
Start:
50,688,900 bp from pter
End:
50,689,193 bp from pter
Size:
294 bases
Orientation:
Plus strand

Genomic View for RN7SL354P Gene

Genes around RN7SL354P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL354P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL354P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL354P Gene

Proteins for RN7SL354P Gene

Post-translational modifications for RN7SL354P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL354P Gene

Domains & Families for RN7SL354P Gene

Gene Families for RN7SL354P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL354P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL354P Gene

Function for RN7SL354P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL354P Gene

Localization for RN7SL354P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL354P Gene

Pathways & Interactions for RN7SL354P Gene

SuperPathways for RN7SL354P Gene

No Data Available

Interacting Proteins for RN7SL354P Gene

Gene Ontology (GO) - Biological Process for RN7SL354P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL354P Gene

Transcripts for RN7SL354P Gene

mRNA/cDNA for RN7SL354P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL354P Gene

No ASD Table

Relevant External Links for RN7SL354P Gene

GeneLoc Exon Structure for
RN7SL354P
ECgene alternative splicing isoforms for
RN7SL354P

Expression for RN7SL354P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL354P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL354P Gene:

RN7SL354P
genes like me logo Genes that share expression patterns with RN7SL354P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL354P Gene

Orthologs for RN7SL354P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL354P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 99 (a)
OneToOne
Species where no ortholog for RN7SL354P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL354P Gene

ENSEMBL:
Gene Tree for RN7SL354P (if available)
TreeFam:
Gene Tree for RN7SL354P (if available)

Paralogs for RN7SL354P Gene

No data available for Paralogs for RN7SL354P Gene

Variants for RN7SL354P Gene

Relevant External Links for RN7SL354P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL354P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL354P Gene

Disorders for RN7SL354P Gene

No disorders were found for RN7SL354P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL354P Gene

Publications for RN7SL354P Gene

No publications were found for RN7SL354P Gene.

Products for RN7SL354P Gene

Sources for RN7SL354P Gene

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