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Aliases for RN7SL3 Gene

Subcategory (RNA class) for RN7SL3 Gene

SRP

Quality Score for this RNA gene is

3

Aliases for RN7SL3 Gene

  • RNA, 7SL, Cytoplasmic 3 2 3
  • RNA, 7SL, Cytoplasmic 631, Pseudogene 2 3
  • Metazoan Signal Recognition Particle RNA 5
  • Metazoa_SRP 5
  • RN7SL631P 3
  • 7L30.2 3
  • RNSRP3 3

External Ids for RN7SL3 Gene

ORGUL Members for RN7SL3 Gene

Previous HGNC Symbols for RN7SL3 Gene

  • RN7SL631P

Previous GeneCards Identifiers for RN7SL3 Gene

  • GC00U913092
  • GC14U900449
  • GC14M050321

Summaries for RN7SL3 Gene

Entrez Gene Summary for RN7SL3 Gene

  • The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL3, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008]

GeneCards Summary for RN7SL3 Gene

RN7SL3 (RNA, 7SL, Cytoplasmic 3) is an RNA Gene, and is affiliated with the SRP RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL3 Gene

Genomics for RN7SL3 Gene

Regulatory Elements for RN7SL3 Gene

Enhancers for RN7SL3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F049857 0.9 Ensembl ENCODE 0.8 -4.2 -4174 1.8 SRF JUNB POLR2H POLR2A IKZF1 NFYB TCF7 SPI1 VCPKMT RNU6-189P GC14M049855 GC14M049865 RN7SL2 RN7SL3
GH14F049860 1.5 FANTOM5 ENCODE 0.4 -8.4 -8381 4.6 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 POLE2 VCPKMT RHOQP1 RPS29 MGAT2 KLHDC1 RPL36AL LINC01588 MAP4K5 LRR1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SL3 on UCSC Golden Path with GeneCards custom track

Promoters for RN7SL3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001456988 1014 2601 ARNT MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for RN7SL3 Gene

Chromosome:
14
Start:
49,853,616 bp from pter
End:
49,853,914 bp from pter
Size:
299 bases
Orientation:
Minus strand

Genomic View for RN7SL3 Gene

Genes around RN7SL3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL3 Gene

Proteins for RN7SL3 Gene

Post-translational modifications for RN7SL3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL3 Gene

Domains & Families for RN7SL3 Gene

Gene Families for RN7SL3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL3 Gene

Function for RN7SL3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL3 Gene

Localization for RN7SL3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL3 Gene

Pathways & Interactions for RN7SL3 Gene

SuperPathways for RN7SL3 Gene

No Data Available

Interacting Proteins for RN7SL3 Gene

Gene Ontology (GO) - Biological Process for RN7SL3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL3 Gene

Transcripts for RN7SL3 Gene

mRNA/cDNA for RN7SL3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL3 Gene

No ASD Table

Relevant External Links for RN7SL3 Gene

GeneLoc Exon Structure for
RN7SL3
ECgene alternative splicing isoforms for
RN7SL3

Expression for RN7SL3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL3 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL3 Gene

This gene is overexpressed in Brain - Substantia nigra (x7.2), Brain - Hippocampus (x6.1), Brain - Putamen (basal ganglia) (x5.4), and Brain - Hypothalamus (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL3 Gene:

RN7SL3
genes like me logo Genes that share expression patterns with RN7SL3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL3 Gene

Orthologs for RN7SL3 Gene

Evolution for RN7SL3 Gene

ENSEMBL:
Gene Tree for RN7SL3 (if available)
TreeFam:
Gene Tree for RN7SL3 (if available)

No data available for Orthologs for RN7SL3 Gene

Paralogs for RN7SL3 Gene

No data available for Paralogs for RN7SL3 Gene

Variants for RN7SL3 Gene

Relevant External Links for RN7SL3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL3 Gene

Disorders for RN7SL3 Gene

No disorders were found for RN7SL3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL3 Gene

Publications for RN7SL3 Gene

  1. Novel upstream and intragenic control elements for the RNA polymerase III-dependent transcription of human 7SL RNA genes. (PMID: 15667936) Englert M. … Beier H. (Biochimie 2004) 2 3 64
  2. Human genes and pseudogenes for the 7SL RNA component of signal recognition particle. (PMID: 6084597) Ullu E. … Weiner A.M. (EMBO J. 1984) 3 64

Products for RN7SL3 Gene

Sources for RN7SL3 Gene

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