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Aliases for RN7SL2 Gene

Subcategory (RNA class) for RN7SL2 Gene

SRP

Quality Score for this RNA gene is

3

Aliases for RN7SL2 Gene

  • RNA, 7SL, Cytoplasmic 2 2 3 5
  • 7L30.1 3
  • RNSRP2 3
  • 7SL1c 3
  • 7L1C 3

External Ids for RN7SL2 Gene

ORGUL Members for RN7SL2 Gene

Previous GeneCards Identifiers for RN7SL2 Gene

  • GC00U913091
  • GC14U900448
  • GC14M049403
  • GC14M050329
  • GC14M049863

Summaries for RN7SL2 Gene

Entrez Gene Summary for RN7SL2 Gene

  • The signal recognition particle (SRP) is a cytoplasmic ribonucleoprotein complex that mediates cotranslational insertion of secretory proteins into the lumen of the endoplasmic reticulum. The SRP consists of 6 polypeptides (e.g., SRP19; MIM 182175) and a 7SL RNA molecule, such as RN7SL2, that is partially homologous to Alu DNA (Ullu and Weiner, 1984 [PubMed 6084597]).[supplied by OMIM, Jul 2008]

GeneCards Summary for RN7SL2 Gene

RN7SL2 (RNA, 7SL, Cytoplasmic 2) is an RNA Gene, and is affiliated with the SRP RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL2 Gene

Genomics for RN7SL2 Gene

Regulatory Elements for RN7SL2 Gene

Enhancers for RN7SL2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F049857 0.8 Ensembl ENCODE 0.8 +4.8 4762 1.8 SRF JUNB POLR2H POLR2A IKZF1 NFYB TCF7 SPI1 VCPKMT RNU6-189P GC14M049855 GC14M049865 RN7SL2 RN7SL3
GH14F049860 1 FANTOM5 ENCODE 0.8 +0.6 555 4.6 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 POLE2 VCPKMT RHOQP1 RPS29 MGAT2 KLHDC1 RPL36AL LINC01588 MAP4K5 LRR1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SL2 on UCSC Golden Path with GeneCards custom track

Promoters for RN7SL2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000240341 349 3001 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9

Genomic Location for RN7SL2 Gene

Chromosome:
14
Start:
49,862,550 bp from pter
End:
49,862,849 bp from pter
Size:
300 bases
Orientation:
Minus strand

Genomic View for RN7SL2 Gene

Genes around RN7SL2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL2 Gene

Proteins for RN7SL2 Gene

Post-translational modifications for RN7SL2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL2 Gene

Domains & Families for RN7SL2 Gene

Gene Families for RN7SL2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL2 Gene

Function for RN7SL2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL2 Gene

Localization for RN7SL2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL2 Gene

Pathways & Interactions for RN7SL2 Gene

SuperPathways for RN7SL2 Gene

No Data Available

Interacting Proteins for RN7SL2 Gene

Gene Ontology (GO) - Biological Process for RN7SL2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL2 Gene

Transcripts for RN7SL2 Gene

mRNA/cDNA for RN7SL2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL2 Gene

No ASD Table

Relevant External Links for RN7SL2 Gene

GeneLoc Exon Structure for
RN7SL2
ECgene alternative splicing isoforms for
RN7SL2

Expression for RN7SL2 Gene

mRNA expression in normal human tissues for RN7SL2 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SL2 Gene

This gene is overexpressed in Whole Blood (x8.7).

NURSA nuclear receptor signaling pathways regulating expression of RN7SL2 Gene:

RN7SL2
genes like me logo Genes that share expression patterns with RN7SL2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL2 Gene

Orthologs for RN7SL2 Gene

Evolution for RN7SL2 Gene

ENSEMBL:
Gene Tree for RN7SL2 (if available)
TreeFam:
Gene Tree for RN7SL2 (if available)

No data available for Orthologs for RN7SL2 Gene

Paralogs for RN7SL2 Gene

No data available for Paralogs for RN7SL2 Gene

Variants for RN7SL2 Gene

Sequence variations from dbSNP and Humsavar for RN7SL2 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10220328 -- 49,863,938(+) aaaaa(A/C)aaaaa nc-transcript-variant, upstream-variant-2KB
rs112462924 -- 49,862,534(+) CTTAA(A/T)GAGGG nc-transcript-variant, downstream-variant-500B
rs113985086 -- 49,862,700(+) CCCCG(A/C)TCCCG nc-transcript-variant, upstream-variant-2KB
rs114753467 -- 49,863,408(+) TGTTT(A/G)TTTTC nc-transcript-variant, upstream-variant-2KB
rs116105026 -- 49,864,562(+) ATTTA(G/T)TTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RN7SL2 Gene

Variant ID Type Subtype PubMed ID
esv28926 CNV gain+loss 19812545

Relevant External Links for RN7SL2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RN7SL2 Gene

Disorders for RN7SL2 Gene

No disorders were found for RN7SL2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL2 Gene

Publications for RN7SL2 Gene

  1. Kinship in the SRP RNA family. (PMID: 19838050) Rosenblad M.A. … Zwieb C. (RNA Biol 2009) 3 64
  2. The tmRDB and SRPDB resources. (PMID: 16381838) Andersen E.S. … Zwieb C. (Nucleic Acids Res. 2006) 3 64
  3. Human genes and pseudogenes for the 7SL RNA component of signal recognition particle. (PMID: 6084597) Ullu E. … Weiner A.M. (EMBO J. 1984) 3 64

Products for RN7SL2 Gene

Sources for RN7SL2 Gene

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