Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RN7SL173P Gene

Subcategory (RNA class) for RN7SL173P Gene

lncRNA

Aliases for RN7SL173P Gene

  • RNA, 7SL, Cytoplasmic 173, Pseudogene 2 3 5

External Ids for RN7SL173P Gene

ORGUL Members for RN7SL173P Gene

Previous GeneCards Identifiers for RN7SL173P Gene

  • GC06P158859

Summaries for RN7SL173P Gene

GeneCards Summary for RN7SL173P Gene

RN7SL173P (RNA, 7SL, Cytoplasmic 173, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SL173P Gene

Genomics for RN7SL173P Gene

Regulatory Elements for RN7SL173P Gene

Enhancers for RN7SL173P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F158439 0.2 ENCODE 0.8 +1.7 1657 0.1 BMI1 EBF1 FOSL1 ZNF316 ZFHX2 DIDO1 EGR1 CBX5 EED RCOR1 ENSG00000238019 RN7SL173P CACYBPP3
GH06F158441 0.6 ENCODE 0.8 +4.2 4167 1.1 CEBPB ZBTB33 ENSG00000238019 RN7SL173P CACYBPP3
GH06F158452 0.5 ENCODE 0.4 +14.7 14707 0.2 ENSG00000238019 RN7SL173P CACYBPP3
GH06F158464 0.4 ENCODE 0.3 +27.1 27102 1.6 PKNOX1 POLR2A POU5F1 KDM1A MNT ENSG00000238019 SNX9 RN7SL173P CACYBPP3
GH06F158460 0.4 ENCODE 0.3 +23.0 22957 1.4 HDGF HDAC1 ATF1 PKNOX1 ARNT FEZF1 YBX1 CHAMP1 GATA2 MIER1 ENSG00000238019 RN7SL173P CACYBPP3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RN7SL173P on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SL173P Gene

Chromosome:
6
Start:
158,437,797 bp from pter
End:
158,438,088 bp from pter
Size:
292 bases
Orientation:
Plus strand

Genomic View for RN7SL173P Gene

Genes around RN7SL173P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SL173P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SL173P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SL173P Gene

Proteins for RN7SL173P Gene

Post-translational modifications for RN7SL173P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SL173P Gene

Domains & Families for RN7SL173P Gene

Gene Families for RN7SL173P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RN7SL173P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SL173P Gene

Function for RN7SL173P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SL173P Gene

Localization for RN7SL173P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SL173P Gene

Pathways & Interactions for RN7SL173P Gene

SuperPathways for RN7SL173P Gene

No Data Available

Interacting Proteins for RN7SL173P Gene

Gene Ontology (GO) - Biological Process for RN7SL173P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SL173P Gene

Transcripts for RN7SL173P Gene

mRNA/cDNA for RN7SL173P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SL173P Gene

No ASD Table

Relevant External Links for RN7SL173P Gene

GeneLoc Exon Structure for
RN7SL173P
ECgene alternative splicing isoforms for
RN7SL173P

Expression for RN7SL173P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SL173P Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SL173P Gene:

RN7SL173P
genes like me logo Genes that share expression patterns with RN7SL173P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SL173P Gene

Orthologs for RN7SL173P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SL173P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia Metazoa_SRP 35
  • 100 (a)
OneToOne
Species where no ortholog for RN7SL173P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SL173P Gene

ENSEMBL:
Gene Tree for RN7SL173P (if available)
TreeFam:
Gene Tree for RN7SL173P (if available)

Paralogs for RN7SL173P Gene

No data available for Paralogs for RN7SL173P Gene

Variants for RN7SL173P Gene

Relevant External Links for RN7SL173P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SL173P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SL173P Gene

Disorders for RN7SL173P Gene

No disorders were found for RN7SL173P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SL173P Gene

Publications for RN7SL173P Gene

No publications were found for RN7SL173P Gene.

Products for RN7SL173P Gene

Sources for RN7SL173P Gene

Content
Loading form....