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Aliases for RN7SKP90 Gene

Subcategory (RNA class) for RN7SKP90 Gene


Aliases for RN7SKP90 Gene

  • RNA, 7SK Small Nuclear Pseudogene 90 2 3 5

External Ids for RN7SKP90 Gene

Summaries for RN7SKP90 Gene

GeneCards Summary for RN7SKP90 Gene

RN7SKP90 (RNA, 7SK Small Nuclear Pseudogene 90) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP90 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snRNA: A small nuclear RNA molecule involved in pre-mRNA splicing and processing.

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP90 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP90 Gene

Genomics for RN7SKP90 Gene

Regulatory Elements for RN7SKP90 Gene

Enhancers for RN7SKP90 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H016855 0.9 ENCODE 0.4 +14.3 14326 2.4 HDAC1 TBP PKNOX1 PTBP1 TBL1XR1 ARNT CHAMP1 TCF12 GATA2 EGR1 RN7SKP90 GC11M016974
GH11H016880 1.2 Ensembl ENCODE dbSUPER 0.3 +39.8 39769 3.9 CTCF ZNF740 TAL1 REST ZIC2 RAD21 ZNF217 NFIC GLIS1 IKZF1 SNORD14B RPS13 OR7E14P PLEKHA7 RN7SKP90 GC11M016974
GH11H016919 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +81.2 81188 7.1 TBP PKNOX1 NFIB INSM2 ARID4B KLF17 SIN3A RFX5 YY1 ZNF366 OR7E14P PLEKHA7 RPL36AP37 RPS13 SNORD14B GC11M016974 RN7SKP90
GH11H016891 1.6 VISTA Ensembl ENCODE dbSUPER 0.2 +51.5 51494 4.9 ZNF217 SMARCE1 CTBP1 GATA3 FOXA2 POLR2A DPF2 SPI1 OR7E14P PLEKHA7 RPL36AP37 RPS13 SNORD14B RN7SKP90 GC11M016974
GH11H016843 0.4 ENCODE 0.7 +2.3 2314 1.5 HNF4G HNF4A OR7E14P PLEKHA7 RN7SKP90 GC11M016974
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP90 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP90 Gene

Genomic Locations for RN7SKP90 Gene
335 bases
Plus strand

Genomic View for RN7SKP90 Gene

Genes around RN7SKP90 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP90 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP90 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP90 Gene

ORGUL Member Location for RN7SKP90 Gene

ORGUL Member Location for RN7SKP90 gene

Proteins for RN7SKP90 Gene

Post-translational modifications for RN7SKP90 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP90 Gene

Domains & Families for RN7SKP90 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP90 Gene

Function for RN7SKP90 Gene

Phenotypes From GWAS Catalog for RN7SKP90 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP90 Gene

Localization for RN7SKP90 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP90 Gene

Pathways & Interactions for RN7SKP90 Gene

SuperPathways for RN7SKP90 Gene

No Data Available

Interacting Proteins for RN7SKP90 Gene

Gene Ontology (GO) - Biological Process for RN7SKP90 Gene


No data available for Pathways by source and SIGNOR curated interactions for RN7SKP90 Gene

Drugs & Compounds for RN7SKP90 Gene

No Compound Related Data Available

Transcripts for RN7SKP90 Gene

mRNA/cDNA for RN7SKP90 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP90 Gene

No ASD Table

Relevant External Links for RN7SKP90 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RN7SKP90 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP90 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP90 Gene:

genes like me logo Genes that share expression patterns with RN7SKP90: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP90 Gene

Orthologs for RN7SKP90 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP90 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia 7SK 34
  • 99 (a)
(Bos Taurus)
Mammalia 7SK 34
  • 66 (a)
(Anolis carolinensis)
Reptilia 7SK 34
  • 70 (a)
Species where no ortholog for RN7SKP90 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP90 Gene

Gene Tree for RN7SKP90 (if available)
Gene Tree for RN7SKP90 (if available)

Paralogs for RN7SKP90 Gene

No data available for Paralogs for RN7SKP90 Gene

Variants for RN7SKP90 Gene

Relevant External Links for RN7SKP90 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP90 Gene

Disorders for RN7SKP90 Gene

No disorders were found for RN7SKP90 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP90 Gene

Publications for RN7SKP90 Gene

  1. Transcription: surprising role for an elusive small nuclear RNA. (PMID: 11864590) Blencowe BJ (Current biology : CB 2002) 1
  2. Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. (PMID: 1646389) Wassarman DA … Steitz JA (Molecular and cellular biology 1991) 1

Products for RN7SKP90 Gene

Sources for RN7SKP90 Gene

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