RN7SKP9 Gene
pseudogene GIFtS : 13 GCID: GC13 P099858
RNA, 7SK small nuclear pseudogene 9
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Aliasesfor RN7SKP9 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Subcategory (RNA class): 7SK RNAQuality score for the ORGUL clustered with this gene is 4 Aliases RNA, 7SK Small Nuclear Pseudogene 9 1 2
External Ids: HGNC: 42627 1 Entrez Gene: 100873853 2 Ensembl: ENSG00000201793 7 Export aliases for RN7SKP9 gene to outside databases Previous GC identifer: GC00U933948
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Summariesfor RN7SKP9 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section fRNAdb sequence ontology for RN7SKP9: 7SK RNA - 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.
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Genomic Viewsfor RN7SKP9 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section Regulatory elements: Search SABiosciences Regulatory transcription factor binding sites for RN7SKP9 Other transcription factors Search SABiosciences Chromatin IP Primers for RN7SKP9 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RN7SKP9
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Ensembl cytogenetic band: 13q32.3 HGNC cytogenetic band: 13q32.3 RN7SKP9 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 13 GeneLoc Exon Structure
GeneLoc location for GC13P099858: view genomic region
(about GC identifiers )
Start: 99,857,962 bp from pter End:
99,858,260 bp from pter
Size: 299 bases Orientation:
plus strand
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Proteinsfor RN7SKP9 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB: --
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Protein
Domains /for RN7SKP9 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Functionfor RN7SKP9 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
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Pathways & Interactionsfor RN7SKP9 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RN7SKP9
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Drugs & Compoundsfor RN7SKP9 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for RN7SKP9 RN7SKP9
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Transcriptsfor RN7SKP9 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,EMD Millipore ,
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000364923(misc_RNA) GeneLoc Exon Structure
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Expression for RN7SKP9 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section RN7SKP9 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for RN7SKP9 Primer Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RN7SKP9 Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RN7SKP9 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RN7SKP9
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Orthologsfor RN7SKP9 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
ENSEMBL Gene Tree for RN7SKP9 (if available)TreeFam Gene Tree for RN7SKP9 (if available)
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Paralogsfor RN7SKP9 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for RN7SKP9 gene ENSG00000222397 2 ENSG00000222704 2 ENSG00000252036 2 ENSG00000201510 2 ENSG00000201287 2 ENSG00000202344 2 ENSG00000223202 2 ENSG00000201912 2 RN7SK 2 ENSG00000201581 2 ENSG00000222764 2 ENSG00000252730 2 ENSG00000199831 2 RN7SKP1 2 ENSG00000252051 2 ENSG00000222567 2 ENSG00000252963 2 ENSG00000222774 2 ENSG00000252360 2 ENSG00000200131 2 ENSG00000222496 2 RN7SKP4 2 ENSG00000222448 2 ENSG00000201027 2 ENSG00000223324 2 ENSG00000223273 2 ENSG00000222931 2 ENSG00000252837 2 ENSG00000223006 2 ENSG00000201612 2 ENSG00000222210 2 ENSG00000200867 2 ENSG00000251751 2 ENSG00000222783 2 ENSG00000253057 2 ENSG00000222259 2 RN7SKP6 2 ENSG00000222413 2 ENSG00000222880 2 ENSG00000238875 2 ENSG00000222220 2 ENSG00000202473 2 ENSG00000201782 2 ENSG00000201428 2 ENSG00000223281 2 ENSG00000252886 2 ENSG00000222460 2 ENSG00000222987 2 RN7SKP5 2 ENSG00000252257 2 ENSG00000201010 2 ENSG00000252076 2 ENSG00000252982 2 ENSG00000251983 2 ENSG00000222946 2 ENSG00000199319 2 ENSG00000222616 2 ENSG00000251732 2 ENSG00000200674 2 ENSG00000222721 2 ENSG00000200312 2 ENSG00000201794 2 ENSG00000251935 2 ENSG00000199640 2 ENSG00000222451 2 ENSG00000199475 2 ENSG00000222678 2 ENSG00000222583 2 RN7SKP3 2 ENSG00000252396 2 ENSG00000252711 2 ENSG00000253006 2 ENSG00000199975 2 ENSG00000252358 2 ENSG00000222078 2 ENSG00000199876 2 ENSG00000252797 2 ENSG00000252484 2 ENSG00000223007 2 ENSG00000199683 2 ENSG00000201564 2 ENSG00000222617 2 ENSG00000252960 2 ENSG00000222874 2 ENSG00000222934 2 ENSG00000222375 2 ENSG00000252757 2 ENSG00000222950 2 ENSG00000222979 2 ENSG00000201640 2 ENSG00000200718 2 ENSG00000252656 2 ENSG00000223174 2 ENSG00000223128 2 ENSG00000201201 2 ENSG00000251759 2 ENSG00000223145 2 ENSG00000222543 2 ENSG00000222685 2 ENSG00000251827 2 ENSG00000222714 2 ENSG00000222942 2 ENSG00000222744 2 ENSG00000252814 2 ENSG00000200830 2 ENSG00000251976 2 ENSG00000222352 2 ENSG00000201758 2 ENSG00000200057 2 ENSG00000223190 2 ENSG00000201496 2 ENSG00000223168 2 ENSG00000253019 2 ENSG00000222755 2 ENSG00000252697 2 ENSG00000251947 2 ENSG00000199218 2 ENSG00000222784 2 ENSG00000199691 2 ENSG00000251814 2 ENSG00000200091 2 ENSG00000222499 2 ENSG00000252087 2 ENSG00000252312 2 ENSG00000201901 2 ENSG00000202512 2 ENSG00000222068 2 ENSG00000222594 2 ENSG00000222174 2 ENSG00000201896 2 ENSG00000200543 2 ENSG00000202415 2 ENSG00000252978 2 ENSG00000222889 2 ENSG00000253020 2 ENSG00000223255 2 ENSG00000200243 2 RN7SKP7 2 ENSG00000223026 2 ENSG00000252794 2 ENSG00000222514 2 ENSG00000200966 2 ENSG00000201600 2 ENSG00000222112 2 ENSG00000222664 2 ENSG00000222524 2 ENSG00000199420 2 ENSG00000222240 2 ENSG00000223056 2 ENSG00000252633 2 ENSG00000200151 2 RN7SKP2 2 ENSG00000222713 2 ENSG00000201066 2 ENSG00000223118 2 ENSG00000222281 2 ENSG00000222589 2 ENSG00000200673 2 ENSG00000222982 2 ENSG00000223142 2 ENSG00000222998 2 ENSG00000253010 2 ENSG00000200472 2 ENSG00000223040 2 ENSG00000222636 2 ENSG00000252716 2 ENSG00000253073 2 ENSG00000222445 2 ENSG00000252595 2 ENSG00000222898 2 ENSG00000201289 2 ENSG00000200783 2 ENSG00000223299 2 ENSG00000200198 2 ENSG00000223120 2 ENSG00000202360 2 ENSG00000223308 2 ENSG00000222154 2 ENSG00000251697 2 ENSG00000252464 2 ENSG00000201395 2 ENSG00000251840 2 ENSG00000222162 2 RN7SKP10 2 ENSG00000251776 2 ENSG00000252163 2 ENSG00000222974 2 ENSG00000252084 2 ENSG00000252704 2 ENSG00000253001 2 ENSG00000222436 2 ENSG00000222404 2 ENSG00000202260 2 ENSG00000252321 2 ENSG00000222706 2 ENSG00000251888 2 ENSG00000222107 2 ENSG00000200895 2 ENSG00000222386 2 ENSG00000202058 2 ENSG00000222574 2 ENSG00000223260 2 ENSG00000201715 2 ENSG00000251810 2 ENSG00000238324 2 ENSG00000201140 2 ENSG00000222069 2 ENSG00000251825 2 ENSG00000201533 2 ENSG00000252838 2 ENSG00000222762 2 ENSG00000222099 2 ENSG00000201315 2 RN7SKP8 2 ENSG00000200488 2 ENSG00000223321 2 ENSG00000223305 2 ENSG00000201364 2 ENSG00000223117 2 ENSG00000200794 2 ENSG00000223126 2 ENSG00000222111 2 ENSG00000199622 2 ENSG00000252634 2 ENSG00000222515 2 ENSG00000200047 2 ENSG00000222102 2 ENSG00000199940 2 ENSG00000201583 2 ENSG00000252827 2 ENSG00000222343 2 ENSG00000223039 2 ENSG00000202392 2 ENSG00000240294 2 ENSG00000222826 2 ENSG00000222257 2 ENSG00000223269 2 ENSG00000252292 2 ENSG00000201967 2 ENSG00000202406 2 ENSG00000222693 2 ENSG00000251809 2 ENSG00000202217 2 ENSG00000201875 2 ENSG00000202351 2 ENSG00000222337 2 ENSG00000200161 2 ENSG00000221399 2 ENSG00000252490 2 ENSG00000201423 2 ENSG00000253015 2 ENSG00000199878 2 ENSG00000202241 2 ENSG00000223042 2 ENSG00000252233 2 ENSG00000222371 2 ENSG00000222385 2 ENSG00000199883 2 ENSG00000252355 2 ENSG00000252322 2 ENSG00000200761 2 ENSG00000222313 2 ENSG00000207269 2 ENSG00000222705 2 ENSG00000252028 2 ENSG00000201684 2 ENSG00000252879 2 ENSG00000199730 2 ENSG00000199197 2 ENSG00000222179 2 ENSG00000222452 2 ENSG00000222376 2 ENSG00000251714 2 ENSG00000253075 2 ENSG00000223282 2 ENSG00000223012 2 ENSG00000222859 2 ENSG00000200475 2 ENSG00000222630 2 ENSG00000223075 2 ENSG00000199719 2 ENSG00000223229 2 ENSG00000223136 2 ENSG00000251951 2 ENSG00000200379 2 ENSG00000251982 2 ENSG00000251742 2 ENSG00000222845 2 ENSG00000253053 2 ENSG00000201358 2 ENSG00000223315 2 ENSG00000222976 2 ENSG00000200708 2 ENSG00000252663 2 ENSG00000201078 2 ENSG00000223223 2 ENSG00000222164 2 ENSG00000222842 2 About GeneDecksing
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Genomic Variantsfor RN7SKP9 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor RN7SKP9 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
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Publicationsfor RN7SKP9 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section --
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External Searches for RN7SKP9 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing RN7SKP9 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing RN7SKP9 gene
(According to HUGE )
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Specialized Databases showing RN7SKP9 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for RN7SKP9 gene: RN7SKP9 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor RN7SKP9 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RN7SKP9 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RN7SKP9 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RN7SKP9 Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RN7SKP9 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RN7SKP9 Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RN7SKP9
Search Tocris compounds for RN7SKP9
Search ThermoFisher Antibodies for RN7SKP9
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RN7SKP9
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Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013
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