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Aliases for RN7SKP87 Gene

Subcategory (RNA class) for RN7SKP87 Gene

7SK RNA

Aliases for RN7SKP87 Gene

  • RNA, 7SK Small Nuclear Pseudogene 87 2 3 5

External Ids for RN7SKP87 Gene

ORGUL Members for RN7SKP87 Gene

Previous GeneCards Identifiers for RN7SKP87 Gene

  • GC09M103345

Summaries for RN7SKP87 Gene

GeneCards Summary for RN7SKP87 Gene

RN7SKP87 (RNA, 7SK Small Nuclear Pseudogene 87) is a Pseudogene, and is affiliated with the 7SK RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP87 Gene

Genomics for RN7SKP87 Gene

Regulatory Elements for RN7SKP87 Gene

Enhancers for RN7SKP87 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G100598 1.2 Ensembl ENCODE 0.4 -17.5 -17500 1.4 RB1 ARID4B SIN3A ZNF48 YY1 ETS1 ELK1 SCRT2 RCOR1 U2AF2 CAVIN4 MSANTD3 GC09M100582 RN7SKP87 PIR40273
GH09G100600 0.9 Ensembl ENCODE 0.4 -19.8 -19841 1.8 CTCF ZNF654 SAP130 TRIM22 ZEB2 RAD21 TEAD3 NFIC RFXANK SMC3 CAVIN4 TMEFF1 INVS GC09M100582 RN7SKP87 PIR40273
GH09G100577 0.4 ENCODE 0.7 +0.8 784 6.0 ZNF24 CAVIN4 TMEFF1 RN7SKP87 GC09M100582
GH09G100595 0.7 ENCODE 0.4 -14.4 -14395 0.2 CTCF ZNF654 STAT1 TRIM22 ARID4B REST EBF1 RAD21 RFX5 ETV4 TMEFF1 MSANTD3-TMEFF1 MSANTD3 GC09M100582 RN7SKP87 PIR40273
GH09G100589 0.6 ENCODE 0.4 -9.1 -9085 1.6 JUND ATF3 POLR2A JUN BHLHE40 NFE2 FOS TMEFF1 CAVIN4 MSANTD3-TMEFF1 MSANTD3 GC09M100582 RN7SKP87 PIR40273
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP87 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP87 Gene

Chromosome:
9
Start:
100,581,079 bp from pter
End:
100,581,379 bp from pter
Size:
301 bases
Orientation:
Minus strand

Genomic View for RN7SKP87 Gene

Genes around RN7SKP87 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP87 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP87 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP87 Gene

Proteins for RN7SKP87 Gene

Post-translational modifications for RN7SKP87 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP87 Gene

Domains & Families for RN7SKP87 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP87 Gene

Function for RN7SKP87 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP87 Gene

Localization for RN7SKP87 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP87 Gene

Pathways & Interactions for RN7SKP87 Gene

SuperPathways for RN7SKP87 Gene

No Data Available

Interacting Proteins for RN7SKP87 Gene

Gene Ontology (GO) - Biological Process for RN7SKP87 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP87 Gene

Transcripts for RN7SKP87 Gene

mRNA/cDNA for RN7SKP87 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP87 Gene

No ASD Table

Relevant External Links for RN7SKP87 Gene

GeneLoc Exon Structure for
RN7SKP87
ECgene alternative splicing isoforms for
RN7SKP87

Expression for RN7SKP87 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP87 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP87 Gene:

RN7SKP87
genes like me logo Genes that share expression patterns with RN7SKP87: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP87 Gene

Orthologs for RN7SKP87 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP87 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 81 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24062 35
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 59 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea 7SK 35 35 35
  • 42 (a)
ManyToMany
Species where no ortholog for RN7SKP87 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP87 Gene

ENSEMBL:
Gene Tree for RN7SKP87 (if available)
TreeFam:
Gene Tree for RN7SKP87 (if available)

Paralogs for RN7SKP87 Gene

No data available for Paralogs for RN7SKP87 Gene

Variants for RN7SKP87 Gene

Relevant External Links for RN7SKP87 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP87

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP87 Gene

Disorders for RN7SKP87 Gene

No disorders were found for RN7SKP87 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP87 Gene

Publications for RN7SKP87 Gene

No publications were found for RN7SKP87 Gene.

Products for RN7SKP87 Gene

Sources for RN7SKP87 Gene

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