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Aliases for RN7SKP80 Gene

Subcategory (RNA class) for RN7SKP80 Gene

7SK RNA

Aliases for RN7SKP80 Gene

  • RNA, 7SK Small Nuclear Pseudogene 80 2 3 5

External Ids for RN7SKP80 Gene

ORGUL Members for RN7SKP80 Gene

Previous GeneCards Identifiers for RN7SKP80 Gene

  • GC22M042963
  • GC22M042968

Summaries for RN7SKP80 Gene

GeneCards Summary for RN7SKP80 Gene

RN7SKP80 (RNA, 7SK Small Nuclear Pseudogene 80) is a Pseudogene, and is affiliated with the 7SK RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP80 Gene

Genomics for RN7SKP80 Gene

Regulatory Elements for RN7SKP80 Gene

Enhancers for RN7SKP80 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G041666 1.4 Ensembl ENCODE 53.6 +897.9 897887 2.5 HDGF PKNOX1 FOXA2 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 RN7SKP80 EP300 PHF5A RRP7BP MEI1 EP300-AS1 XRCC6 LOC100313968 ENSG00000232754 SNU13
GH22G042989 1.9 FANTOM5 Ensembl ENCODE dbSUPER 29.3 -428.9 -428928 9.1 PKNOX1 FOXA2 WRNIP1 SIN3A ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF143 RN7SKP80 RPL5P34 RRP7BP PACSIN2 ARFGAP3 NAGA FAM109B A4GALT NDUFA6 PIR35633
GH22G042623 1.1 ENCODE dbSUPER 45.4 -58.3 -58341 1.1 ZNF493 ZFP64 ZNF48 ZEB1 ZNF138 ZNF354C KLF7 ZNF680 ZNF654 SP3 RN7SKP80 RPL5P34 RRP7BP LOC100506679 CYB5R3 SNU13 ENSG00000270022 RNU12 ATP5L2
GH22G041961 0.9 ENCODE 45.2 +604.2 604239 0.2 ZNF493 ZFP64 ZEB1 ZNF302 ZNF138 SCRT2 ZNF654 SP3 ZNF680 ZNF426 EP300 RN7SKP80 RPL5P34 PHF5A NDUFA6 XRCC6 RRP7BP SNU13 WBP2NL ENSG00000232754
GH22G042077 1.2 ENCODE 23.6 +486.1 486069 3.9 HDGF PKNOX1 CREB3L1 AGO1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SMDT1 EP300 CYP2D6 RPL5P34 PHF5A XRCC6 RN7SKP80 LOC100506679 TOB2 RRP7BP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP80 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP80 Gene

Chromosome:
22
Start:
42,565,048 bp from pter
End:
42,565,330 bp from pter
Size:
283 bases
Orientation:
Minus strand

Genomic View for RN7SKP80 Gene

Genes around RN7SKP80 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP80 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP80 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP80 Gene

Proteins for RN7SKP80 Gene

Post-translational modifications for RN7SKP80 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP80 Gene

Domains & Families for RN7SKP80 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP80 Gene

Function for RN7SKP80 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP80 Gene

Localization for RN7SKP80 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP80 Gene

Pathways & Interactions for RN7SKP80 Gene

SuperPathways for RN7SKP80 Gene

No Data Available

Interacting Proteins for RN7SKP80 Gene

Gene Ontology (GO) - Biological Process for RN7SKP80 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP80 Gene

Transcripts for RN7SKP80 Gene

mRNA/cDNA for RN7SKP80 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP80 Gene

No ASD Table

Relevant External Links for RN7SKP80 Gene

GeneLoc Exon Structure for
RN7SKP80
ECgene alternative splicing isoforms for
RN7SKP80

Expression for RN7SKP80 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP80 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP80 Gene:

RN7SKP80
genes like me logo Genes that share expression patterns with RN7SKP80: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP80 Gene

Orthologs for RN7SKP80 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP80 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 35
  • 79 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23973 35
  • 71 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia 7SK 35
  • 70 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 79 (a)
OneToMany
Species where no ortholog for RN7SKP80 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP80 Gene

ENSEMBL:
Gene Tree for RN7SKP80 (if available)
TreeFam:
Gene Tree for RN7SKP80 (if available)

Paralogs for RN7SKP80 Gene

No data available for Paralogs for RN7SKP80 Gene

Variants for RN7SKP80 Gene

Relevant External Links for RN7SKP80 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP80

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP80 Gene

Disorders for RN7SKP80 Gene

No disorders were found for RN7SKP80 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP80 Gene

Publications for RN7SKP80 Gene

No publications were found for RN7SKP80 Gene.

Products for RN7SKP80 Gene

Sources for RN7SKP80 Gene

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