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Aliases for RN7SKP7 Gene

Subcategory (RNA class) for RN7SKP7 Gene

7SK RNA

Aliases for RN7SKP7 Gene

  • RNA, 7SK Small Nuclear Pseudogene 7 2 3

External Ids for RN7SKP7 Gene

ORGUL Members for RN7SKP7 Gene

Previous GeneCards Identifiers for RN7SKP7 Gene

  • GC00U933435
  • GC13M097603
  • GC13M097612
  • GC13M097623
  • GC13M097632
  • GC13M097641

Summaries for RN7SKP7 Gene

GeneCards Summary for RN7SKP7 Gene

RN7SKP7 (RNA, 7SK Small Nuclear Pseudogene 7) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP7 Gene - the ORGUL cluster for this gene includes several descriptions:

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP7 Gene

Genomics for RN7SKP7 Gene

Genomic Location for RN7SKP7 Gene

Start:
96,949,249 bp from pter
End:
96,949,533 bp from pter
Size:
285 bases
Orientation:
Minus strand

Genomic View for RN7SKP7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RN7SKP7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP7 Gene

ORGUL Member Location for RN7SKP7 Gene

ORGUL Member Location for RN7SKP7 gene

No data available for Regulatory Elements for RN7SKP7 Gene

Proteins for RN7SKP7 Gene

Post-translational modifications for RN7SKP7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP7 Gene

Domains for RN7SKP7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP7 Gene

Function for RN7SKP7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RN7SKP7 Gene

Localization for RN7SKP7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP7 Gene

Pathways for RN7SKP7 Gene

SuperPathways for RN7SKP7 Gene

No Data Available

Interacting Proteins for RN7SKP7 Gene

Gene Ontology (GO) - Biological Process for RN7SKP7 Gene

None

No data available for Pathways by source for RN7SKP7 Gene

Transcripts for RN7SKP7 Gene

mRNA/cDNA for RN7SKP7 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP7 Gene

No ASD Table

Relevant External Links for RN7SKP7 Gene

GeneLoc Exon Structure for
RN7SKP7
ECgene alternative splicing isoforms for
RN7SKP7

Expression for RN7SKP7 Gene

mRNA expression in normal human tissues for RN7SKP7 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP7 Gene

This gene is overexpressed in Testis (50.5).
genes like me logo Genes that share expressions with RN7SKP7: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for RN7SKP7 Gene

Orthologs for RN7SKP7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 36
  • 58 (a)
ManyToMany
Species with no ortholog for RN7SKP7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP7 Gene

ENSEMBL:
Gene Tree for RN7SKP7 (if available)
TreeFam:
Gene Tree for RN7SKP7 (if available)

Paralogs for RN7SKP7 Gene

No data available for Paralogs for RN7SKP7 Gene

Variants for RN7SKP7 Gene

Relevant External Links for RN7SKP7 Gene

HapMap Linkage Disequilibrium report
RN7SKP7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for RN7SKP7 Gene

Disorders for RN7SKP7 Gene

No disorders were found for RN7SKP7 Gene.

No data available for UniProtKB/Swiss-Prot for RN7SKP7 Gene

Publications for RN7SKP7 Gene

No publications were found for RN7SKP7 Gene.

Products for RN7SKP7 Gene

Sources for RN7SKP7 Gene

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