Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RN7SKP56 Gene

Subcategory (RNA class) for RN7SKP56 Gene

7SK RNA

Aliases for RN7SKP56 Gene

  • RNA, 7SK Small Nuclear Pseudogene 56 2 3 5

External Ids for RN7SKP56 Gene

ORGUL Members for RN7SKP56 Gene

Previous GeneCards Identifiers for RN7SKP56 Gene

  • GC06P126197

Summaries for RN7SKP56 Gene

GeneCards Summary for RN7SKP56 Gene

RN7SKP56 (RNA, 7SK Small Nuclear Pseudogene 56) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP56 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP56 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP56 Gene

Genomics for RN7SKP56 Gene

Regulatory Elements for RN7SKP56 Gene

Enhancers for RN7SKP56 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H125871 1.1 ENCODE dbSUPER 0.7 -2.5 -2536 1 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT TCF12 CBX5 GATA2 ETV6 CEBPB HINT3 NCOA7-AS1 RN7SKP56
GH06H125867 1.3 Ensembl ENCODE dbSUPER 0.4 -6.5 -6516 2 FEZF1 RFX5 ZNF366 SCRT2 ZNF350 RCOR1 ZNF362 CEBPB OVOL3 ZNF843 HINT3 NCOA7-AS1 HEY2 RN7SKP56
GH06H125858 1 ENCODE dbSUPER 0.4 -16.3 -16259 0 CTCF RB1 SAP130 ARID4B ZNF384 ZNF2 RAD21 TEAD3 CC2D1A CTBP1 HINT3 NCOA7-AS1 RN7SKP56
GH06H125828 1.3 Ensembl ENCODE dbSUPER 0.3 -42.9 -42922 7 HDAC1 PKNOX1 TAL1 ZMYM3 ZIC2 ZNF316 CTBP1 POLR2A ZSCAN5C ZNF600 HINT3 HEY2 LOC102723341 NCOA7-AS1 RN7SKP56
GH06H125839 1.2 Ensembl ENCODE dbSUPER 0.3 -35.5 -35499 0 ZBTB21 FOSL1 SCRT2 ZNF600 ZNF639 ZFP37 ZEB2 ZNF843 ZSCAN21 ZSCAN23 NCOA7-AS1 HINT3 RN7SKP56
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP56 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP56 Gene

Chromosome:
6
Start:
125,875,168 bp from pter
End:
125,875,498 bp from pter
Size:
331 bases
Orientation:
Plus strand

Genomic View for RN7SKP56 Gene

Genes around RN7SKP56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP56 Gene

Proteins for RN7SKP56 Gene

Post-translational modifications for RN7SKP56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP56 Gene

Domains & Families for RN7SKP56 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP56 Gene

Function for RN7SKP56 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP56 Gene

Localization for RN7SKP56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP56 Gene

Pathways & Interactions for RN7SKP56 Gene

SuperPathways for RN7SKP56 Gene

No Data Available

Interacting Proteins for RN7SKP56 Gene

Gene Ontology (GO) - Biological Process for RN7SKP56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP56 Gene

Drugs & Compounds for RN7SKP56 Gene

No Compound Related Data Available

Transcripts for RN7SKP56 Gene

mRNA/cDNA for RN7SKP56 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP56 Gene

No ASD Table

Relevant External Links for RN7SKP56 Gene

GeneLoc Exon Structure for
RN7SKP56
ECgene alternative splicing isoforms for
RN7SKP56

Expression for RN7SKP56 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP56 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP56 Gene:

RN7SKP56
genes like me logo Genes that share expression patterns with RN7SKP56: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP56 Gene

Orthologs for RN7SKP56 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24248 34
  • 52 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 66 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea 7SK 34 34 34
  • 39 (a)
ManyToMany
Species where no ortholog for RN7SKP56 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP56 Gene

ENSEMBL:
Gene Tree for RN7SKP56 (if available)
TreeFam:
Gene Tree for RN7SKP56 (if available)

Paralogs for RN7SKP56 Gene

No data available for Paralogs for RN7SKP56 Gene

Variants for RN7SKP56 Gene

Relevant External Links for RN7SKP56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP56 Gene

Disorders for RN7SKP56 Gene

No disorders were found for RN7SKP56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP56 Gene

Publications for RN7SKP56 Gene

No publications were found for RN7SKP56 Gene.

Products for RN7SKP56 Gene

Sources for RN7SKP56 Gene

Content
Loading form....