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Aliases for RN7SKP55 Gene

Subcategory (RNA class) for RN7SKP55 Gene

7SK RNA

Aliases for RN7SKP55 Gene

  • RNA, 7SK Small Nuclear Pseudogene 55 2 3 5

External Ids for RN7SKP55 Gene

ORGUL Members for RN7SKP55 Gene

Previous GeneCards Identifiers for RN7SKP55 Gene

  • GC01P245110

Summaries for RN7SKP55 Gene

GeneCards Summary for RN7SKP55 Gene

RN7SKP55 (RNA, 7SK Small Nuclear Pseudogene 55) is a Pseudogene, and is affiliated with the 7SK RNA class.

Additional gene information for RN7SKP55 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP55 Gene

Genomics for RN7SKP55 Gene

Regulatory Elements for RN7SKP55 Gene

Enhancers for RN7SKP55 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H244860 1.7 Ensembl ENCODE dbSUPER 13.4 -80.3 -80341 6 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF548 SP3 NFYC SSRP1 HNRNPU DESI2 COX20 ADSS CATSPERE ENSG00000240963 ENSG00000238224 RN7SKP55 LOC101928068 ENSG00000237759
GH01H244967 1.4 ENCODE dbSUPER 13.5 +26.4 26356 4 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 MEF2D LOC101928068 EFCAB2 HNRNPU COX20 ADSS ENSG00000238224 ENSG00000240963 RN7SKP55 DESI2 ENSG00000237759
GH01H244832 1.4 ENCODE dbSUPER 13.3 -108.3 -108312 6 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 ZNF610 GLIS1 RCOR2 DESI2 HNRNPU COX20 ADSS ENSG00000240963 ENSG00000238224 LOC101928068 AKT3 RN7SKP55 ENSG00000237759
GH01H244651 1.1 ENCODE 13.3 -290.7 -290680 3 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 SP3 HNRNPU ENSG00000240963 ENSG00000238224 RN7SKP55 ENSG00000237759 LOC101928068 DESI2 RPL37P8
GH01H244239 0.9 Ensembl 13.2 -704.3 -704310 0 ZSCAN4 ZNF133 ZNF2 ZNF23 ZNF366 ZSCAN5C SCRT2 ZNF416 ZNF680 ZNF280D HNRNPU CATSPERE DESI2 LOC101928068 SDCCAG8 ENSG00000236031 ENSG00000240963 RN7SKP55 COX20 AKT3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP55 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP55 Gene

Chromosome:
1
Start:
244,943,910 bp from pter
End:
244,944,216 bp from pter
Size:
307 bases
Orientation:
Plus strand

Genomic View for RN7SKP55 Gene

Genes around RN7SKP55 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP55 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP55 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP55 Gene

Proteins for RN7SKP55 Gene

Post-translational modifications for RN7SKP55 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP55 Gene

Domains & Families for RN7SKP55 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP55 Gene

Function for RN7SKP55 Gene

Phenotypes From GWAS Catalog for RN7SKP55 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP55 Gene

Localization for RN7SKP55 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP55 Gene

Pathways & Interactions for RN7SKP55 Gene

SuperPathways for RN7SKP55 Gene

No Data Available

Interacting Proteins for RN7SKP55 Gene

Gene Ontology (GO) - Biological Process for RN7SKP55 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP55 Gene

Drugs & Compounds for RN7SKP55 Gene

No Compound Related Data Available

Transcripts for RN7SKP55 Gene

mRNA/cDNA for RN7SKP55 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP55 Gene

No ASD Table

Relevant External Links for RN7SKP55 Gene

GeneLoc Exon Structure for
RN7SKP55
ECgene alternative splicing isoforms for
RN7SKP55

Expression for RN7SKP55 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP55 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP55 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x18.1) and Brain - Cerebellum (x14.5).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP55 Gene:

RN7SKP55
genes like me logo Genes that share expression patterns with RN7SKP55: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP55 Gene

Orthologs for RN7SKP55 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP55 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 34
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 7SK 34
  • 72 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25782 34
  • 63 (a)
ManyToMany
chicken
(Gallus gallus)
Aves 7SK 34
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 77 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii rn7sk 34
  • 75 (a)
OneToMany
Species where no ortholog for RN7SKP55 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SKP55 Gene

ENSEMBL:
Gene Tree for RN7SKP55 (if available)
TreeFam:
Gene Tree for RN7SKP55 (if available)

Paralogs for RN7SKP55 Gene

No data available for Paralogs for RN7SKP55 Gene

Variants for RN7SKP55 Gene

Relevant External Links for RN7SKP55 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP55

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP55 Gene

Disorders for RN7SKP55 Gene

No disorders were found for RN7SKP55 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP55 Gene

Publications for RN7SKP55 Gene

No publications were found for RN7SKP55 Gene.

Products for RN7SKP55 Gene

Sources for RN7SKP55 Gene

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