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Aliases for RN7SKP52 Gene

Subcategory (RNA class) for RN7SKP52 Gene

7SK RNA

Aliases for RN7SKP52 Gene

  • RNA, 7SK Small Nuclear Pseudogene 52 2 3 5

External Ids for RN7SKP52 Gene

ORGUL Members for RN7SKP52 Gene

Previous GeneCards Identifiers for RN7SKP52 Gene

  • GC03M177223

Summaries for RN7SKP52 Gene

GeneCards Summary for RN7SKP52 Gene

RN7SKP52 (RNA, 7SK Small Nuclear Pseudogene 52) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP52 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP52 Gene

Genomics for RN7SKP52 Gene

Regulatory Elements for RN7SKP52 Gene

Enhancers for RN7SKP52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G177499 0.9 ENCODE 0.7 +3.4 3418 0.8 TBP FOXA2 MLX ARID4B DMAP1 THRB RAD21 YY1 GATA4 CREM RN7SKP52 LINC00578
GH03G177515 1.4 FANTOM5 Ensembl ENCODE 0.4 -13.1 -13087 1.9 ELF3 MLX ARID4B DMAP1 THRB ZNF48 RAD21 RARA GATA2 MIXL1 TBL1XR1-AS1 RN7SKP52 ENSG00000200288 GC03M177625
GH03G177490 1.4 Ensembl ENCODE dbSUPER 0.4 +11.4 11442 4.1 ELF3 NFIB ZFP64 ZBTB40 RAD21 YY1 ZNF202 NFYC ELF4 CEBPB ENSG00000200288 TBL1XR1-AS1 LINC00578 LINC01208 RN7SKP52
GH03G177477 1.6 Ensembl ENCODE dbSUPER 0.3 +24.5 24492 4.1 CREB3L1 ARNT MLX SIN3A DMAP1 FEZF1 ZNF2 YY1 ZNF766 ZNF143 TBL1XR1-AS1 LINC01208 LINC00578 RN7SKP52
GH03G177512 1.1 Ensembl ENCODE 0.4 -10.5 -10544 2.7 ELF3 FOXA2 DMAP1 RAD21 ZNF48 CHAMP1 RARA YY1 CREM MIXL1 RN7SKP52 ENSG00000200288 GC03M177625
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP52 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP52 Gene

Chromosome:
3
Start:
177,503,303 bp from pter
End:
177,503,552 bp from pter
Size:
250 bases
Orientation:
Minus strand

Genomic View for RN7SKP52 Gene

Genes around RN7SKP52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP52 Gene

Proteins for RN7SKP52 Gene

Post-translational modifications for RN7SKP52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP52 Gene

Domains & Families for RN7SKP52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP52 Gene

Function for RN7SKP52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP52 Gene

Localization for RN7SKP52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP52 Gene

Pathways & Interactions for RN7SKP52 Gene

SuperPathways for RN7SKP52 Gene

No Data Available

Interacting Proteins for RN7SKP52 Gene

Gene Ontology (GO) - Biological Process for RN7SKP52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP52 Gene

Drugs & Compounds for RN7SKP52 Gene

No Compound Related Data Available

Transcripts for RN7SKP52 Gene

mRNA/cDNA for RN7SKP52 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP52 Gene

No ASD Table

Relevant External Links for RN7SKP52 Gene

GeneLoc Exon Structure for
RN7SKP52
ECgene alternative splicing isoforms for
RN7SKP52

Expression for RN7SKP52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP52 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP52 Gene:

RN7SKP52
genes like me logo Genes that share expression patterns with RN7SKP52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP52 Gene

Orthologs for RN7SKP52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 35
  • 43 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm26167 35
  • 38 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 7SK 35
  • 28 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 46 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea 7SK 35 35 35
  • 32 (a)
ManyToMany
Species where no ortholog for RN7SKP52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP52 Gene

ENSEMBL:
Gene Tree for RN7SKP52 (if available)
TreeFam:
Gene Tree for RN7SKP52 (if available)

Paralogs for RN7SKP52 Gene

No data available for Paralogs for RN7SKP52 Gene

Variants for RN7SKP52 Gene

Relevant External Links for RN7SKP52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP52 Gene

Disorders for RN7SKP52 Gene

No disorders were found for RN7SKP52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP52 Gene

Publications for RN7SKP52 Gene

No publications were found for RN7SKP52 Gene.

Products for RN7SKP52 Gene

Sources for RN7SKP52 Gene

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