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Aliases for RN7SKP49 Gene

Subcategory (RNA class) for RN7SKP49 Gene

lncRNA

Aliases for RN7SKP49 Gene

  • RNA, 7SK Small Nuclear Pseudogene 49 2 3 5

External Ids for RN7SKP49 Gene

ORGUL Members for RN7SKP49 Gene

Previous GeneCards Identifiers for RN7SKP49 Gene

  • GC01M224295

Summaries for RN7SKP49 Gene

GeneCards Summary for RN7SKP49 Gene

RN7SKP49 (RNA, 7SK Small Nuclear Pseudogene 49) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SKP49 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP49 Gene

Genomics for RN7SKP49 Gene

Regulatory Elements for RN7SKP49 Gene

Enhancers for RN7SKP49 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H224622 1.9 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -516.2 -516211 2 ZNF133 FEZF1 ZNF2 ZNF766 ZNF302 ZNF548 ATF7 RUNX3 SP3 TSHZ1 NVL CICP5 LOC100287497 GTF2IP20 RN7SKP49 CAPN2 WDR26 CNIH3 LOC105373106 LOC102723817
GH01H224615 1.5 Ensembl ENCODE dbSUPER 14.6 -510.3 -510271 4 ARNT ZNF133 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 ZNF302 ZNF416 KLF7 NVL CICP5 RN7SKP49 LOC100287497 FBXO28 WDR26 LOC105373106 LOC102723817 ENSG00000234247
GH01H224429 1.4 ENCODE dbSUPER 14.6 -326.0 -325968 7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CNIH4 NVL RN7SKP49 CICP5 GTF2IP20 GC01P224430 CNIH3
GH01H223736 1.4 Ensembl ENCODE dbSUPER 14.6 +367.9 367888 5 HDGF PKNOX1 FEZF1 ZNF121 GLIS2 SCRT2 ZNF391 ZNF362 ZNF280D TSHZ1 RN7SKP49 CAPN2 NVL GTF2IP20 CAPN8 GC01M223736 GC01M223727
GH01H224328 1.2 ENCODE 14.6 -222.4 -222426 3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 RN7SKP49 CNIH4 NVL GC01M224258
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP49 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP49 Gene

Chromosome:
1
Start:
224,107,282 bp from pter
End:
224,107,541 bp from pter
Size:
260 bases
Orientation:
Minus strand

Genomic View for RN7SKP49 Gene

Genes around RN7SKP49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP49 Gene

Proteins for RN7SKP49 Gene

Post-translational modifications for RN7SKP49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP49 Gene

Domains & Families for RN7SKP49 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP49 Gene

Function for RN7SKP49 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP49 Gene

Localization for RN7SKP49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP49 Gene

Pathways & Interactions for RN7SKP49 Gene

SuperPathways for RN7SKP49 Gene

No Data Available

Interacting Proteins for RN7SKP49 Gene

Gene Ontology (GO) - Biological Process for RN7SKP49 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP49 Gene

Drugs & Compounds for RN7SKP49 Gene

No Compound Related Data Available

Transcripts for RN7SKP49 Gene

mRNA/cDNA for RN7SKP49 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP49 Gene

No ASD Table

Relevant External Links for RN7SKP49 Gene

GeneLoc Exon Structure for
RN7SKP49
ECgene alternative splicing isoforms for
RN7SKP49

Expression for RN7SKP49 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP49 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP49 Gene:

RN7SKP49
genes like me logo Genes that share expression patterns with RN7SKP49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP49 Gene

Orthologs for RN7SKP49 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP49 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 34
  • 40 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23553 34
  • 40 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 35 (a)
ManyToMany
Species where no ortholog for RN7SKP49 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP49 Gene

ENSEMBL:
Gene Tree for RN7SKP49 (if available)
TreeFam:
Gene Tree for RN7SKP49 (if available)

Paralogs for RN7SKP49 Gene

No data available for Paralogs for RN7SKP49 Gene

Variants for RN7SKP49 Gene

Relevant External Links for RN7SKP49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP49 Gene

Disorders for RN7SKP49 Gene

No disorders were found for RN7SKP49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP49 Gene

Publications for RN7SKP49 Gene

No publications were found for RN7SKP49 Gene.

Products for RN7SKP49 Gene

Sources for RN7SKP49 Gene

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