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Aliases for RN7SKP39 Gene

Subcategory (RNA class) for RN7SKP39 Gene

lncRNA

Aliases for RN7SKP39 Gene

  • RNA, 7SK Small Nuclear Pseudogene 39 2 3 5

External Ids for RN7SKP39 Gene

ORGUL Members for RN7SKP39 Gene

Previous GeneCards Identifiers for RN7SKP39 Gene

  • GC10M028733

Summaries for RN7SKP39 Gene

GeneCards Summary for RN7SKP39 Gene

RN7SKP39 (RNA, 7SK Small Nuclear Pseudogene 39) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP39 Gene

Genomics for RN7SKP39 Gene

Regulatory Elements for RN7SKP39 Gene

Enhancers for RN7SKP39 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G028443 1 FANTOM5 ENCODE 0.7 -1.2 -1164 0.9 MTA2 ZBTB2 TEAD2 ZNF384 ZEB2 TEAD3 MCM7 GATA3 GATA2 SMARCA4 RN7SKP39 LOC105376468
GH10G028478 1.1 Ensembl ENCODE 0.3 -36.5 -36522 1.2 TAL1 ZFP64 ZNF140 ZNF266 ZNF101 ZNF697 YY1 ZNF766 EGR1 NFE2 WAC LOC105376468 RN7SKP39
GH10G028491 0.9 Ensembl ENCODE 0.2 -49.5 -49458 1.9 ZNF121 KLF1 CEBPB KLF17 ELF4 ZBTB33 PRDM1 ZBTB40 WAC-AS1 WAC LOC105376468 RN7SKP39
GH10G028494 0.9 ENCODE 0.2 -51.6 -51631 0.2 PKNOX1 FOXA2 ATF1 ARNT TCF12 ZNF766 GATA2 NCOA1 ZNF592 SMARCA4 LOC105376468 RN7SKP39
GH10G028458 0.4 ENCODE 0.4 -16.6 -16628 1.1 RBBP5 WAC WAC-AS1 RN7SKP39 LOC105376468
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP39 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP39 Gene

Chromosome:
10
Start:
28,442,575 bp from pter
End:
28,442,896 bp from pter
Size:
322 bases
Orientation:
Minus strand

Genomic View for RN7SKP39 Gene

Genes around RN7SKP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP39 Gene

Proteins for RN7SKP39 Gene

Post-translational modifications for RN7SKP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP39 Gene

Domains & Families for RN7SKP39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP39 Gene

Function for RN7SKP39 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP39 Gene

Localization for RN7SKP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP39 Gene

Pathways & Interactions for RN7SKP39 Gene

SuperPathways for RN7SKP39 Gene

No Data Available

Interacting Proteins for RN7SKP39 Gene

Gene Ontology (GO) - Biological Process for RN7SKP39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP39 Gene

Transcripts for RN7SKP39 Gene

mRNA/cDNA for RN7SKP39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP39 Gene

No ASD Table

Relevant External Links for RN7SKP39 Gene

GeneLoc Exon Structure for
RN7SKP39
ECgene alternative splicing isoforms for
RN7SKP39

Expression for RN7SKP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP39 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP39 Gene:

RN7SKP39
genes like me logo Genes that share expression patterns with RN7SKP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP39 Gene

Orthologs for RN7SKP39 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP39 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 35
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25782 35
  • 53 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia 7SK 35
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves 7SK 35
  • 62 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii rn7sk 35
  • 59 (a)
OneToMany
Species where no ortholog for RN7SKP39 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SKP39 Gene

ENSEMBL:
Gene Tree for RN7SKP39 (if available)
TreeFam:
Gene Tree for RN7SKP39 (if available)

Paralogs for RN7SKP39 Gene

No data available for Paralogs for RN7SKP39 Gene

Variants for RN7SKP39 Gene

Relevant External Links for RN7SKP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP39 Gene

Disorders for RN7SKP39 Gene

No disorders were found for RN7SKP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP39 Gene

Publications for RN7SKP39 Gene

No publications were found for RN7SKP39 Gene.

Products for RN7SKP39 Gene

Sources for RN7SKP39 Gene

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