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Aliases for RN7SKP30 Gene

Subcategory (RNA class) for RN7SKP30 Gene

lncRNA

Aliases for RN7SKP30 Gene

  • RNA, 7SK Small Nuclear Pseudogene 30 2 3 5

External Ids for RN7SKP30 Gene

ORGUL Members for RN7SKP30 Gene

Previous GeneCards Identifiers for RN7SKP30 Gene

  • GC04M056407

Summaries for RN7SKP30 Gene

GeneCards Summary for RN7SKP30 Gene

RN7SKP30 (RNA, 7SK Small Nuclear Pseudogene 30) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP30 Gene

Genomics for RN7SKP30 Gene

Regulatory Elements for RN7SKP30 Gene

Enhancers for RN7SKP30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G055543 1.1 ENCODE 35 -5.5 -5542 4.8 FOXA2 PKNOX1 ARNT CREB3L1 AGO1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 RN7SKP30 TMEM165 NMU ENSG00000269921 CLOCK ENSG00000272969 SRD5A3
GH04G055436 1.1 ENCODE dbSUPER 35 +102.5 102520 2.8 HDAC1 PKNOX1 ATF1 FOXA2 TBL1XR1 TCF12 GATA2 CREM ZBTB2 ZEB2 RN7SKP30 TMEM165 CLOCK SRD5A3-AS1 GC04M055433 PIR52615 ENSG00000238585 GC04M055502
GH04G055394 1.4 ENCODE dbSUPER 16.5 +143.5 143545 4.7 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 CEP135 TMEM165 RN7SKP30 CLOCK AASDH SRD5A3 NMU ENSG00000272969 GC04P055398
GH04G055345 1.3 ENCODE dbSUPER 12.6 +193.9 193898 2.6 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF766 ZNF143 ZNF207 FOS SRD5A3 RN7SKP30 CEP135 TMEM165 FCF1P8
GH04G055445 0.5 ENCODE 30.7 +94.7 94675 1.7 CTCF JUND KDM1A RAD21 RN7SKP30 TMEM165 CLOCK PIR52615 GC04M055433 GC04M055502 ENSG00000238585
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP30 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP30 Gene

Chromosome:
4
Start:
55,540,502 bp from pter
End:
55,540,835 bp from pter
Size:
334 bases
Orientation:
Minus strand

Genomic View for RN7SKP30 Gene

Genes around RN7SKP30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP30 Gene

Proteins for RN7SKP30 Gene

Post-translational modifications for RN7SKP30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP30 Gene

Domains & Families for RN7SKP30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP30 Gene

Function for RN7SKP30 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP30 Gene

Localization for RN7SKP30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP30 Gene

Pathways & Interactions for RN7SKP30 Gene

SuperPathways for RN7SKP30 Gene

No Data Available

Interacting Proteins for RN7SKP30 Gene

Gene Ontology (GO) - Biological Process for RN7SKP30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP30 Gene

Transcripts for RN7SKP30 Gene

mRNA/cDNA for RN7SKP30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP30 Gene

No ASD Table

Relevant External Links for RN7SKP30 Gene

GeneLoc Exon Structure for
RN7SKP30
ECgene alternative splicing isoforms for
RN7SKP30

Expression for RN7SKP30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP30 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP30 Gene

This gene is overexpressed in Testis (x10.0).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP30 Gene:

RN7SKP30
genes like me logo Genes that share expression patterns with RN7SKP30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP30 Gene

Orthologs for RN7SKP30 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia 7SK 35
  • 76 (a)
OneToOne
Species where no ortholog for RN7SKP30 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP30 Gene

ENSEMBL:
Gene Tree for RN7SKP30 (if available)
TreeFam:
Gene Tree for RN7SKP30 (if available)

Paralogs for RN7SKP30 Gene

No data available for Paralogs for RN7SKP30 Gene

Variants for RN7SKP30 Gene

Relevant External Links for RN7SKP30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP30 Gene

Disorders for RN7SKP30 Gene

No disorders were found for RN7SKP30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP30 Gene

Publications for RN7SKP30 Gene

No publications were found for RN7SKP30 Gene.

Products for RN7SKP30 Gene

Sources for RN7SKP30 Gene

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