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Aliases for RN7SKP289 Gene

Subcategory (RNA class) for RN7SKP289 Gene

lncRNA

Aliases for RN7SKP289 Gene

  • RNA, 7SK Small Nuclear Pseudogene 289 2 3 5

External Ids for RN7SKP289 Gene

ORGUL Members for RN7SKP289 Gene

Previous GeneCards Identifiers for RN7SKP289 Gene

  • GC12P054210

Summaries for RN7SKP289 Gene

GeneCards Summary for RN7SKP289 Gene

RN7SKP289 (RNA, 7SK Small Nuclear Pseudogene 289) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SKP289 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP289 Gene

Genomics for RN7SKP289 Gene

GeneHancer (GH) Regulatory Elements for RN7SKP289 Gene

Promoters and enhancers for RN7SKP289 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I053820 Enhancer 0.7 ENCODE 0.8 +4.5 4507 0.2 PKNOX1 ZNF146 JUN RAD21 RFX5 FOSL1 ZNF316 GATA3 NFYB PRDM10 RN7SKP289 GC12P053834
GH12I053824 Enhancer 1.2 ENCODE dbSUPER 0.4 +9.4 9415 1.7 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 YY1 TCF12 AAAS ZNF740 TARBP2 HNRNPA1 CSAD MAP3K12 ENSG00000258344 SP1 ATF7 ENSG00000257808
GH12I053811 Enhancer 0.5 dbSUPER 0.8 -4.5 -4524 1 ZNF776 NFATC3 ZBTB2 ZNF184 ZNF366 ZNF512 PRDM1 TARBP2 ZNF740 HOXC8 ENSG00000257596 RN7SKP289 GC12M053768
GH12I053806 Enhancer 0.8 ENCODE dbSUPER 0.4 -9.4 -9401 0.7 YY2 HLF INSM2 KLF17 FEZF1 ZNF335 ZNF600 FOS PRDM1 HOXC13-AS HOXC13 HOXC6 HOXC9 HOXC-AS1 HOXC-AS2 HOXC8 RN7SKP289 GC12M053768
GH12I053798 Enhancer 0.8 ENCODE 0.4 -17.4 -17433 0.2 ELF3 FOXA2 MLX BATF RARA SCRT2 ATF7 CREM IKZF2 THAP11 RN7SKP289 GC12M053768
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP289 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP289 Gene

Genomic Locations for RN7SKP289 Gene
chr12:53,816,185-53,816,479
(GRCh38/hg38)
Size:
295 bases
Orientation:
Plus strand
chr12:54,209,969-54,210,263
(GRCh37/hg19)

Genomic View for RN7SKP289 Gene

Genes around RN7SKP289 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP289 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP289 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP289 Gene

Proteins for RN7SKP289 Gene

Post-translational modifications for RN7SKP289 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP289 Gene

Domains & Families for RN7SKP289 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP289 Gene

Function for RN7SKP289 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP289 Gene

Localization for RN7SKP289 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP289 Gene

Pathways & Interactions for RN7SKP289 Gene

SuperPathways for RN7SKP289 Gene

No Data Available

Interacting Proteins for RN7SKP289 Gene

Gene Ontology (GO) - Biological Process for RN7SKP289 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP289 Gene

Drugs & Compounds for RN7SKP289 Gene

No Compound Related Data Available

Transcripts for RN7SKP289 Gene

mRNA/cDNA for RN7SKP289 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP289 Gene

No ASD Table

Relevant External Links for RN7SKP289 Gene

GeneLoc Exon Structure for
RN7SKP289
ECgene alternative splicing isoforms for
RN7SKP289

Expression for RN7SKP289 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP289 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP289 Gene:

RN7SKP289
genes like me logo Genes that share expression patterns with RN7SKP289: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP289 Gene

Orthologs for RN7SKP289 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP289 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24597 34
  • 50 (a)
OneToMany
Gm24213 34
  • 45 (a)
OneToMany
Gm22563 34
  • 41 (a)
OneToMany
Gm25717 34
  • 41 (a)
OneToMany
dog
(Canis familiaris)
Mammalia 7SK 34
  • 47 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 7SK 34
  • 45 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 34
  • 42 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 49 (a)
OneToOne
Species where no ortholog for RN7SKP289 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP289 Gene

ENSEMBL:
Gene Tree for RN7SKP289 (if available)
TreeFam:
Gene Tree for RN7SKP289 (if available)

Paralogs for RN7SKP289 Gene

No data available for Paralogs for RN7SKP289 Gene

Variants for RN7SKP289 Gene

Additional Variant Information for RN7SKP289 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP289

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP289 Gene

Disorders for RN7SKP289 Gene

No disorders were found for RN7SKP289 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP289 Gene

Publications for RN7SKP289 Gene

No publications were found for RN7SKP289 Gene.

Products for RN7SKP289 Gene

Sources for RN7SKP289 Gene

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