Aliases for RN7SKP289 Gene
Subcategory (RNA class) for RN7SKP289 Gene
lncRNA
External Ids for RN7SKP289 Gene
- HGNC: 46013
- Entrez Gene: 106479224
- Ensembl: ENSG00000253053
ORGUL Members for RN7SKP289 Gene
Previous GeneCards Identifiers for RN7SKP289 Gene
- GC12P054210
Summaries for RN7SKP289 Gene
GeneCards Summary for RN7SKP289 Gene
RN7SKP289 (RNA, 7SK Small Nuclear Pseudogene 289) is a Pseudogene, and is affiliated with the lncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP289 Gene
Genomics for RN7SKP289 Gene
Regulatory Elements for RN7SKP289 Gene
Enhancers for RN7SKP289 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH12G053818 | 0.8 | dbSUPER | 0.7 | +2.8 | 2815 | 1.7 | YBX3 HDGF ZSCAN4 NFXL1 YBX1 ZNF2 TCF12 ZNF366 EGR1 BCLAF1 | CBX5 MAP3K12 PFDN5 SPRYD3 ENSG00000258086 HOXC5 ENSG00000260470 LOC283335 HOXC8 ITGA5 |
| GH12G053820 | 0.8 | ENCODE | 0.7 | +4.5 | 4507 | 0.2 | PKNOX1 ZNF146 TAF1 JUN DMAP1 RAD21 YY1 RFX5 FOSL1 GATA3 | RN7SKP289 GC12P053834 |
| GH12G053824 | 1.3 | ENCODE dbSUPER | 0.4 | +9.4 | 9415 | 1.7 | FOXA2 PKNOX1 ARNT MLX ZFP64 ARID4B DMAP1 ZNF2 YY1 SLC30A9 | MAP3K12 CBX5 LOC100240735 GC12P053834 RN7SKP289 |
| GH12G053806 | 1.1 | ENCODE dbSUPER | 0.4 | -9.4 | -9401 | 0.7 | PTBP1 ARNT INSM2 KLF17 FEZF1 FOS KLF7 CREM ZNF263 YY2 | HOXC13 HOXC13-AS HOXC6 HOXC9 HOXC-AS2 HOXC-AS1 HOXC8 RN7SKP289 GC12M053768 |
| GH12G053811 | 0.6 | dbSUPER | 0.7 | -4.5 | -4524 | 1.0 | ZNF335 ZNF776 ZBTB2 ZNF366 ZNF512 PRDM1 EZH2 | TARBP2 ZNF740 HOXC8 ENSG00000257596 RN7SKP289 GC12M053768 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around RN7SKP289 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for RN7SKP289 Gene
- Chromosome:
- 12
- Start:
- 53,816,185 bp from pter
- End:
- 53,816,479 bp from pter
- Size:
- 295 bases
- Orientation:
- Plus strand
Genomic View for RN7SKP289 Gene
Genes around RN7SKP289 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q13.13 by Ensembl
- 12q13.13 by Entrez Gene
- 12q13.13 by HGNC
RN7SKP289 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RN7SKP289 Gene
Proteins for RN7SKP289 Gene
Post-translational modifications for RN7SKP289 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for RN7SKP289
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RN7SKP289
- Origene Custom Protein Services for RN7SKP289
- Search GeneTex for Proteins for RN7SKP289
Assay Products
No data available for DME Specific Peptides for RN7SKP289 Gene
Domains & Families for RN7SKP289 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP289 Gene
Function for RN7SKP289 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for RN7SKP289
-
- Search ViGene Biosciences for RN7SKP289
CRISPR Products
- Browse CRISPR knockouts for RN7SKP289
miRNA Products
- Search ViGene Biosciences for RN7SKP289
Inhibitory RNA Products
- Search ViGene Biosciences for RN7SKP289
Clone Products
- GenScript: Custom all cDNA clones Services for RN7SKP289
- VectorBuilder custom plasmid, inducible vectors for RN7SKP289
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RN7SKP289
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for RN7SKP289
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP289 Gene
Localization for RN7SKP289 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP289 Gene
Transcripts for RN7SKP289 Gene
mRNA/cDNA for RN7SKP289 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for RN7SKP289
miRNA Products
- Search ViGene Biosciences for RN7SKP289
Inhibitory RNA Products
- Search ViGene Biosciences for RN7SKP289
Clone Products
- GenScript: Custom all cDNA clones Services for RN7SKP289
- VectorBuilder custom plasmid, inducible vectors for RN7SKP289
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RN7SKP289
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for RN7SKP289 Gene
NURSA nuclear receptor signaling pathways regulating expression of RN7SKP289 Gene:
RN7SKP289
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP289 Gene
Orthologs for RN7SKP289 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | 7SK 35 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Gm24597 35 |
|
OneToMany | |
| Gm24213 35 |
|
OneToMany | |||
| Gm22563 35 |
|
OneToMany | |||
| Gm25717 35 |
|
OneToMany | |||
| dog (Canis familiaris) |
Mammalia | 7SK 35 |
|
ManyToMany | |
| cow (Bos Taurus) |
Mammalia | 7SK 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | 7SK 35 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | 7SK 35 |
|
OneToOne |
- Species where no ortholog for RN7SKP289 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for RN7SKP289 Gene
No data available for Paralogs for RN7SKP289 Gene
Variants for RN7SKP289 Gene
Relevant External Links for RN7SKP289 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RN7SKP289
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP289 Gene
Disorders for RN7SKP289 Gene
No disorders were found for RN7SKP289 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP289 Gene
Publications for RN7SKP289 Gene
No publications were found for RN7SKP289 Gene.
Products for RN7SKP289 Gene
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- Custom Antibody Services
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- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RN7SKP289
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- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for RN7SKP289
- VectorBuilder custom plasmid, inducible vectors for RN7SKP289
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for RN7SKP289
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for RN7SKP289 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
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- (120) RVIS
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- (122) diseasecard
- (123) NIH Rare Diseases
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- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
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- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer