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Aliases for RN7SKP273 Gene

Subcategory (RNA class) for RN7SKP273 Gene

7SK RNA

Aliases for RN7SKP273 Gene

  • RNA, 7SK Small Nuclear Pseudogene 273 2 3 5

External Ids for RN7SKP273 Gene

ORGUL Members for RN7SKP273 Gene

Previous GeneCards Identifiers for RN7SKP273 Gene

  • GC11P111555

Summaries for RN7SKP273 Gene

GeneCards Summary for RN7SKP273 Gene

RN7SKP273 (RNA, 7SK Small Nuclear Pseudogene 273) is a Pseudogene, and is affiliated with the 7SK RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP273 Gene

Genomics for RN7SKP273 Gene

Regulatory Elements for RN7SKP273 Gene

Enhancers for RN7SKP273 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F111693 1.2 Ensembl ENCODE 0.4 +11.6 11605 2.7 HDGF PKNOX1 NFRKB INSM2 KLF17 FEZF1 RAD21 ZNF335 ZNF366 FOS PPP2R1B SIK2 LAYN RN7SKP273 PIR48599
GH11F111697 1.4 FANTOM5 Ensembl ENCODE 0.3 +15.7 15652 2.6 PKNOX1 ATF1 ARNT CREB3L1 CHAMP1 GATA2 SMARCA5 JUNB CEBPB ZEB2 PPP2R1B BTG4 C11orf88 MIR34B MIR34C SIK2 RN7SKP273 PIR48599
GH11F111718 0.8 Ensembl ENCODE 0.3 +35.5 35508 1.2 JUND ZFP3 ZNF341 ZNF600 PRDM1 PIR48599 RN7SKP273
GH11F111706 0.7 ENCODE 0.3 +24.2 24209 1.4 SOX13 MAX CEBPG FEZF1 RAD21 TCF7L2 BHLHE40 HLF CEBPB MNT PPP2R1B SIK2 BTG4 C11orf88 MIR34B MIR34C PIR48599 RN7SKP273
GH11F111702 0.6 ENCODE 0.3 +20.3 20267 2.0 ZNF664 CTCF RNF2 RAD21 YY1 PPP2R1B SIK2 POU2AF1 LOC644277 MIR34B BTG4 C11orf88 MIR34C PIR48599 RN7SKP273
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP273 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP273 Gene

Chromosome:
11
Start:
111,683,111 bp from pter
End:
111,683,424 bp from pter
Size:
314 bases
Orientation:
Plus strand

Genomic View for RN7SKP273 Gene

Genes around RN7SKP273 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP273 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP273 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP273 Gene

Proteins for RN7SKP273 Gene

Post-translational modifications for RN7SKP273 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP273 Gene

Domains & Families for RN7SKP273 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP273 Gene

Function for RN7SKP273 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP273 Gene

Localization for RN7SKP273 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP273 Gene

Pathways & Interactions for RN7SKP273 Gene

SuperPathways for RN7SKP273 Gene

No Data Available

Interacting Proteins for RN7SKP273 Gene

Gene Ontology (GO) - Biological Process for RN7SKP273 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP273 Gene

Transcripts for RN7SKP273 Gene

mRNA/cDNA for RN7SKP273 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP273 Gene

No ASD Table

Relevant External Links for RN7SKP273 Gene

GeneLoc Exon Structure for
RN7SKP273
ECgene alternative splicing isoforms for
RN7SKP273

Expression for RN7SKP273 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP273 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP273 Gene:

RN7SKP273
genes like me logo Genes that share expression patterns with RN7SKP273: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP273 Gene

Orthologs for RN7SKP273 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RN7SKP273 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 99 (a)
OneToOne
Species where no ortholog for RN7SKP273 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP273 Gene

ENSEMBL:
Gene Tree for RN7SKP273 (if available)
TreeFam:
Gene Tree for RN7SKP273 (if available)

Paralogs for RN7SKP273 Gene

No data available for Paralogs for RN7SKP273 Gene

Variants for RN7SKP273 Gene

Relevant External Links for RN7SKP273 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP273

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP273 Gene

Disorders for RN7SKP273 Gene

No disorders were found for RN7SKP273 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP273 Gene

Publications for RN7SKP273 Gene

No publications were found for RN7SKP273 Gene.

Products for RN7SKP273 Gene

Sources for RN7SKP273 Gene

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