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Aliases for RN7SKP269 Gene

Subcategory (RNA class) for RN7SKP269 Gene

7SK RNA

Aliases for RN7SKP269 Gene

  • RNA, 7SK Small Nuclear Pseudogene 269 2 3 5

External Ids for RN7SKP269 Gene

ORGUL Members for RN7SKP269 Gene

Previous GeneCards Identifiers for RN7SKP269 Gene

  • GC01P010009

Summaries for RN7SKP269 Gene

GeneCards Summary for RN7SKP269 Gene

RN7SKP269 (RNA, 7SK Small Nuclear Pseudogene 269) is a Pseudogene, and is affiliated with the 7SK RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP269 Gene

Genomics for RN7SKP269 Gene

Regulatory Elements for RN7SKP269 Gene

Enhancers for RN7SKP269 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F009881 1.4 Ensembl ENCODE 11.2 -64.9 -64942 1.7 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 YY1 CTNNBIP1 LINC01759 ENSG00000223989 NMNAT1 RN7SKP269 ENSG00000228150 LZIC RBP7 PIR35071
GH01F010063 1.4 FANTOM5 Ensembl ENCODE 10.5 +118.6 118648 5.7 PKNOX1 RAD21 YY1 ZNF121 FOS CREM MEF2D TFDP1 SMARCA4 PBX2 LZIC UBE4B RN7SKP269 ENSG00000228150 NMNAT1 ENSG00000223989 CTNNBIP1 RNU6-828P KIF1B PGAM1P11
GH01F009888 1.3 Ensembl ENCODE 10.9 -55.6 -55594 6.2 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 ZNF48 ZNF121 ZNF766 GLIS2 ENSG00000223989 ENSG00000228150 LZIC NMNAT1 RN7SKP269 UBE4B CENPS CTNNBIP1 PIR35071
GH01F010073 1.1 Ensembl ENCODE 10.8 +127.2 127194 2.2 KLF1 CBX3 MAX BACH1 SIN3A ZNF121 ZNF316 NCOR1 SCRT2 FOS UBE4B RN7SKP269 ENSG00000228150 LZIC NMNAT1 RNU6-37P CENPS CTNNBIP1 PGAM1P11 RNU6-828P
GH01F009786 1.1 Ensembl ENCODE 10.7 -159.9 -159918 2.0 CTCF BCOR PKNOX1 ZMYM3 ZIC2 ZNF335 ZNF316 GLIS2 ZBTB48 PATZ1 CLSTN1 ENSG00000223989 CTNNBIP1 ENSG00000228150 LZIC NMNAT1 RN7SKP269 MZT1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP269 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP269 Gene

Chromosome:
1
Start:
9,947,318 bp from pter
End:
9,947,636 bp from pter
Size:
319 bases
Orientation:
Plus strand

Genomic View for RN7SKP269 Gene

Genes around RN7SKP269 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP269 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP269 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP269 Gene

Proteins for RN7SKP269 Gene

Post-translational modifications for RN7SKP269 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP269 Gene

Domains & Families for RN7SKP269 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP269 Gene

Function for RN7SKP269 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP269 Gene

Localization for RN7SKP269 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP269 Gene

Pathways & Interactions for RN7SKP269 Gene

SuperPathways for RN7SKP269 Gene

No Data Available

Interacting Proteins for RN7SKP269 Gene

Gene Ontology (GO) - Biological Process for RN7SKP269 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP269 Gene

Transcripts for RN7SKP269 Gene

mRNA/cDNA for RN7SKP269 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP269 Gene

No ASD Table

Relevant External Links for RN7SKP269 Gene

GeneLoc Exon Structure for
RN7SKP269
ECgene alternative splicing isoforms for
RN7SKP269

Expression for RN7SKP269 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RN7SKP269 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP269 Gene

This gene is overexpressed in Muscle - Skeletal (x7.8) and Whole Blood (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP269 Gene:

RN7SKP269
genes like me logo Genes that share expression patterns with RN7SKP269: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RN7SKP269 Gene

Orthologs for RN7SKP269 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP269 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 7SK 35
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia 7SK 35
  • 72 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia 7SK 35
  • 70 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24447 35
  • 70 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia 7SK 35
  • 75 (a)
OneToMany
Species where no ortholog for RN7SKP269 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP269 Gene

ENSEMBL:
Gene Tree for RN7SKP269 (if available)
TreeFam:
Gene Tree for RN7SKP269 (if available)

Paralogs for RN7SKP269 Gene

No data available for Paralogs for RN7SKP269 Gene

Variants for RN7SKP269 Gene

Relevant External Links for RN7SKP269 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP269

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP269 Gene

Disorders for RN7SKP269 Gene

No disorders were found for RN7SKP269 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP269 Gene

Publications for RN7SKP269 Gene

No publications were found for RN7SKP269 Gene.

Products for RN7SKP269 Gene

Sources for RN7SKP269 Gene

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