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Aliases for RN7SKP268 Gene

Subcategory (RNA class) for RN7SKP268 Gene

lncRNA

Aliases for RN7SKP268 Gene

  • RNA, 7SK Small Nuclear Pseudogene 268 2 3 5

External Ids for RN7SKP268 Gene

ORGUL Members for RN7SKP268 Gene

Previous GeneCards Identifiers for RN7SKP268 Gene

  • GC06P151641

Summaries for RN7SKP268 Gene

GeneCards Summary for RN7SKP268 Gene

RN7SKP268 (RNA, 7SK Small Nuclear Pseudogene 268) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RN7SKP268 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP268 Gene

Genomics for RN7SKP268 Gene

Regulatory Elements for RN7SKP268 Gene

Enhancers for RN7SKP268 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H151316 1.1 Ensembl ENCODE dbSUPER 0.7 -1.9 -1864 1 JUND PRDM6 CEBPA CEBPB FOS EP300 SETDB1 AKAP12 ENSG00000232290 PIR44138 RN7SKP268
GH06H151323 1.3 ENCODE dbSUPER 0.4 +6.1 6131 4 FOXA2 ARID4B DMAP1 ZNF2 GTF3C2 GLIS2 ZNF143 RUNX3 SP3 ZHX2 ZBTB2 HSPA8P15 ENSG00000232290 AKAP12 RMND1 RN7SKP268 GC06P151355 PIR45449
GH06H151334 1 Ensembl ENCODE 0.4 +15.6 15553 0 CTCF ZNF2 RAD21 TEAD3 CC2D1A SMC3 ZNF143 HOMEZ SMARCA5 ZNF654 RMND1 PIR45449 RN7SKP268 GC06P151355
GH06H151329 0.8 ENCODE dbSUPER 0.4 +10.7 10696 1 ZBTB48 POLR2A RCOR1 ATF7 ATF2 ZBTB2 ENSG00000232290 ARMT1 AKAP12 RN7SKP268 PIR45449 GC06P151355
GH06H151339 0.6 ENCODE 0.4 +19.9 19886 0 TCF12 NFIC POLR2A NCOR1 TAL1 ZSCAN29 KDM1A GC06P151355 PIR45449 RN7SKP268
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP268 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP268 Gene

Chromosome:
6
Start:
151,319,635 bp from pter
End:
151,319,950 bp from pter
Size:
316 bases
Orientation:
Plus strand

Genomic View for RN7SKP268 Gene

Genes around RN7SKP268 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP268 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP268 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP268 Gene

Proteins for RN7SKP268 Gene

Post-translational modifications for RN7SKP268 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP268 Gene

Domains & Families for RN7SKP268 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP268 Gene

Function for RN7SKP268 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP268 Gene

Localization for RN7SKP268 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP268 Gene

Pathways & Interactions for RN7SKP268 Gene

SuperPathways for RN7SKP268 Gene

No Data Available

Interacting Proteins for RN7SKP268 Gene

Gene Ontology (GO) - Biological Process for RN7SKP268 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP268 Gene

Drugs & Compounds for RN7SKP268 Gene

No Compound Related Data Available

Transcripts for RN7SKP268 Gene

mRNA/cDNA for RN7SKP268 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP268 Gene

No ASD Table

Relevant External Links for RN7SKP268 Gene

GeneLoc Exon Structure for
RN7SKP268
ECgene alternative splicing isoforms for
RN7SKP268

Expression for RN7SKP268 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP268 Gene

mRNA differential expression in normal tissues according to GTEx for RN7SKP268 Gene

This gene is overexpressed in Ovary (x6.8).

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP268 Gene:

RN7SKP268
genes like me logo Genes that share expression patterns with RN7SKP268: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP268 Gene

Orthologs for RN7SKP268 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP268 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia 7SK 34
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23789 34
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia 7SK 34
  • 62 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea 7SK 34 34 34
  • 42 (a)
ManyToMany
Species where no ortholog for RN7SKP268 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP268 Gene

ENSEMBL:
Gene Tree for RN7SKP268 (if available)
TreeFam:
Gene Tree for RN7SKP268 (if available)

Paralogs for RN7SKP268 Gene

No data available for Paralogs for RN7SKP268 Gene

Variants for RN7SKP268 Gene

Relevant External Links for RN7SKP268 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP268

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP268 Gene

Disorders for RN7SKP268 Gene

No disorders were found for RN7SKP268 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP268 Gene

Publications for RN7SKP268 Gene

No publications were found for RN7SKP268 Gene.

Products for RN7SKP268 Gene

Sources for RN7SKP268 Gene

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