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RN7SKP24 Gene(Pseudogene)

RNA, 7SK Small Nuclear Pseudogene 24

GCID:
GC09P034480
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RN7SKP24 Gene

Subcategory (RNA class) for RN7SKP24 Gene

7SK RNA

Aliases for RN7SKP24 Gene

  • RNA, 7SK Small Nuclear Pseudogene 24 2 3 5

External Ids for RN7SKP24 Gene

ORGUL Members for RN7SKP24 Gene

Summaries for RN7SKP24 Gene

GeneCards Summary for RN7SKP24 Gene

RN7SKP24 (RNA, 7SK Small Nuclear Pseudogene 24) is a Pseudogene, and is affiliated with the 7SK RNA class.

fRNAdb sequence ontologies for RN7SKP24 Gene

  • 7SK RNA: 7SK was discovered as an abundant small nuclear RNA in the mid-70s but a possible function has only recently been suggested [1]. Two independent studies have found that 7SK RNA binds the CDK9/cyclin T complex (known as elongation factor P-TEFb). P-TEFb activates transcription by phosphorylating the C-terminal domain of RNA polymerase II. This process is negatively regulated by the 7SK RNP. The secondary structure of 7SK RNA shown here was proposed by Wasserman and Steitz on the basis of chemical modification and enzymatic cleavage experiments [2]. This family contains a number of annotated pseudogenes and 7SK derived repeats. The threshold is artificially high to minimise the pseudogene count.

Additional gene information for RN7SKP24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RN7SKP24 Gene

Genomics for RN7SKP24 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RN7SKP24 Gene

Promoters and enhancers for RN7SKP24 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09I034463 Enhancer 0.7 ENCODE 0.4 -14.7 -14744 0.2 NFIB ZBTB21 JUN CEBPG RFX5 FOSL1 ZNF335 ZFHX2 GATA3 ZNF366 FAM219A DNAI1 RN7SKP24
GH09I034459 Enhancer 0.6 ENCODE 0.4 -19.3 -19341 0 HDAC1 ZSCAN26 BCL11B ZNF335 ZNF366 BCL11A IKZF1 NR2C1 NR2F6 NR2C2 DNAI1 FAM219A RN7SKP24
GH09I034500 Enhancer 0.7 ENCODE 0.3 +22.2 22226 0.2 CTCF ZNF654 ARID4B JUNB TRIM22 REST BATF ZNF2 IRF4 RAD21 FAM219A ENSG00000230729 ENHO DNAI1 ARID3C SIGMAR1 GALT PIR54959 RN7SKP24
GH09I034512 Enhancer 0.7 ENCODE 0.3 +34.5 34488 0.8 SOX13 FOXA2 THRB RARA ZNF335 FOXK2 RERE NR2F6 GATAD2A HMG20B CNTFR FAM219A DNAI1 RPP25L GALT ARID3C SIGMAR1 PIR54959 RN7SKP24
GH09I034514 Enhancer 0.7 ENCODE 0.3 +34.0 33996 0.2 FOXA2 THRB FOXK2 NR2F6 HMG20B NFIA NR2F1 FOXA3 FOXA1 SKI CNTFR FAM219A DNAI1 RPP25L SIGMAR1 GALT ARID3C NUDT2 PIR54959 RN7SKP24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RN7SKP24 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RN7SKP24 Gene

Genomic Locations for RN7SKP24 Gene
chr9:34,478,622-34,478,905
(GRCh38/hg38)
Size:
284 bases
Orientation:
Plus strand
chr9:34,478,620-34,478,903
(GRCh37/hg19)

Genomic View for RN7SKP24 Gene

Genes around RN7SKP24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP24 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RN7SKP24 Gene

Proteins for RN7SKP24 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RN7SKP24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP24 Gene

Domains & Families for RN7SKP24 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP24 Gene

Function for RN7SKP24 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP24 Gene

Localization for RN7SKP24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RN7SKP24 Gene

Pathways & Interactions for RN7SKP24 Gene

SuperPathways for RN7SKP24 Gene

PathCards logo More details on SuperPathways for RN7SKP24
No Data Available

Interacting Proteins for RN7SKP24 Gene

Gene Ontology (GO) - Biological Process for RN7SKP24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP24 Gene

Drugs & Compounds for RN7SKP24 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RN7SKP24 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RN7SKP24 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP24 Gene

No ASD Table

Relevant External Links for RN7SKP24 Gene

GeneLoc Exon Structure for
RN7SKP24
ECgene alternative splicing isoforms for
RN7SKP24

Expression for RN7SKP24 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP24 Gene

mRNA expression in normal human tissues for RN7SKP24 Gene
mRNA expression by GTEx for RN7SKP24 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP24 Gene:

RN7SKP24
genes like me logo Genes that share expression patterns with RN7SKP24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP24 Gene

Orthologs for RN7SKP24 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RN7SKP24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia 7SK 34
  • 85 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm22477 34
  • 41 (a)
 ManyToMany
zebrafish
(Danio rerio)
 Actinopterygii 7SK 34
  • 30 (a)
 OneToMany
Species where no ortholog for RN7SKP24 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RN7SKP24 Gene

ENSEMBL:
Gene Tree for RN7SKP24 (if available)
TreeFam:
Gene Tree for RN7SKP24 (if available)

Paralogs for RN7SKP24 Gene

No data available for Paralogs for RN7SKP24 Gene

Variants for RN7SKP24 Gene

Additional Variant Information for RN7SKP24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP24 Gene

Disorders for RN7SKP24 Gene

No disorders were found for RN7SKP24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP24 Gene

Publications for RN7SKP24 Gene

No publications were found for RN7SKP24 Gene.

Products for RN7SKP24 Gene

Sources for RN7SKP24 Gene

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