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Aliases for RN7SKP232 Gene

Subcategory (RNA class) for RN7SKP232 Gene

lncRNA

Aliases for RN7SKP232 Gene

  • RNA, 7SK Small Nuclear Pseudogene 232 2 3 5

External Ids for RN7SKP232 Gene

ORGUL Members for RN7SKP232 Gene

Previous GeneCards Identifiers for RN7SKP232 Gene

  • GC05M151084

Summaries for RN7SKP232 Gene

GeneCards Summary for RN7SKP232 Gene

RN7SKP232 (RNA, 7SK Small Nuclear Pseudogene 232) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RN7SKP232 Gene

Genomics for RN7SKP232 Gene

Regulatory Elements for RN7SKP232 Gene

Enhancers for RN7SKP232 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G151706 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.6 -3574 2.7 HDAC1 ELF3 TBP HDGF FOXA2 CBX3 ATF1 BMI1 RARA YY1 SPARC CTB-113P19.1 SLC36A3 RN7SKP232 ENSG00000272112
GH05G151702 1.4 Ensembl ENCODE dbSUPER 0.7 +1.8 1787 1.5 HDGF ATF1 PKNOX1 CREB3L1 NFIB ARNT NFRKB ZNF335 GTF3C2 POLR3A CTB-113P19.1 LOC105378231 RN7SKP232 SPARC
GH05G151692 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.7 7704 9.5 HNRNPUL1 FOXA2 PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF300P1 RPLP1P6 ATOX1 G3BP1 SPARC CTB-113P19.1 LOC105378231 RN7SKP232
GH05G151717 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.3 -14341 3.0 HDGF ATF1 PKNOX1 NFIB ZNF2 ZBTB40 RAD21 ETV6 RELB CREM RPLP1P6 SPARC ATOX1 G3BP1 FAT2 LOC105378231 ENSG00000272112 RN7SKP232
GH05G151721 1.4 Ensembl ENCODE dbSUPER 0.4 -17.1 -17123 0.6 PKNOX1 TCF12 ZNF766 ELK1 ZNF143 RELB IKZF2 EGR2 THAP11 HCFC1 SPARC FAT2 LOC105378231 ENSG00000272112 RN7SKP232
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RN7SKP232 on UCSC Golden Path with GeneCards custom track

Genomic Location for RN7SKP232 Gene

Chromosome:
5
Start:
151,704,289 bp from pter
End:
151,704,578 bp from pter
Size:
290 bases
Orientation:
Minus strand

Genomic View for RN7SKP232 Gene

Genes around RN7SKP232 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RN7SKP232 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RN7SKP232 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RN7SKP232 Gene

Proteins for RN7SKP232 Gene

Post-translational modifications for RN7SKP232 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RN7SKP232 Gene

Domains & Families for RN7SKP232 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RN7SKP232 Gene

Function for RN7SKP232 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RN7SKP232 Gene

Localization for RN7SKP232 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RN7SKP232 Gene

Pathways & Interactions for RN7SKP232 Gene

SuperPathways for RN7SKP232 Gene

No Data Available

Interacting Proteins for RN7SKP232 Gene

Gene Ontology (GO) - Biological Process for RN7SKP232 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RN7SKP232 Gene

Transcripts for RN7SKP232 Gene

mRNA/cDNA for RN7SKP232 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RN7SKP232 Gene

No ASD Table

Relevant External Links for RN7SKP232 Gene

GeneLoc Exon Structure for
RN7SKP232
ECgene alternative splicing isoforms for
RN7SKP232

Expression for RN7SKP232 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RN7SKP232 Gene

NURSA nuclear receptor signaling pathways regulating expression of RN7SKP232 Gene:

RN7SKP232
genes like me logo Genes that share expression patterns with RN7SKP232: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RN7SKP232 Gene

Orthologs for RN7SKP232 Gene

This gene was present in the common ancestor of mammals.

Orthologs for RN7SKP232 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia 7SK 35
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25319 35
  • 61 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia 7SK 35
  • 50 (a)
ManyToMany
Species where no ortholog for RN7SKP232 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RN7SKP232 Gene

ENSEMBL:
Gene Tree for RN7SKP232 (if available)
TreeFam:
Gene Tree for RN7SKP232 (if available)

Paralogs for RN7SKP232 Gene

No data available for Paralogs for RN7SKP232 Gene

Variants for RN7SKP232 Gene

Relevant External Links for RN7SKP232 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RN7SKP232

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RN7SKP232 Gene

Disorders for RN7SKP232 Gene

No disorders were found for RN7SKP232 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RN7SKP232 Gene

Publications for RN7SKP232 Gene

No publications were found for RN7SKP232 Gene.

Products for RN7SKP232 Gene

Sources for RN7SKP232 Gene

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